Mir-153-P2a

MirGeneDB ID

Tni-Mir-153-P2a

Family name

MIR-153 (all species)

Seed

UGCAUAG

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-153b

Paralogues

Tni-Mir-153-P1b Tni-Mir-153-P2b

Orthologues

Aca-Mir-153-P2 Agr-Mir-153 Ami-Mir-153-P2 Asu-Mir-153 Bfl-Mir-153 Bko-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P2 Cfa-Mir-153-P2 Cin-Mir-153 Cja-Mir-153-P2 Cli-Mir-153-P2 Cmi-Mir-153-P2 Cpi-Mir-153-P2 Cte-Mir-153 Dgr-Mir-153 Dma-Mir-153 Dno-Mir-153-P2 Dpu-Mir-153 Dre-Mir-153-P2a Eba-Mir-153 Eca-Mir-153-P2 Egr-Mir-153 Gga-Mir-153-P2 Gja-Mir-153-P2 Gmo-Mir-153-P2a Gsa-Mir-153 Gsp-Mir-153 Hmi-Mir-153 Hru-Mir-153 Hsa-Mir-153-P2 Isc-Mir-153 Laf-Mir-153-P2 Lan-Mir-153 Lch-Mir-153-P2 Lgi-Mir-153 Llo-Mir-153 Loc-Mir-153-P2 Mal-Mir-153-P2a Mdo-Mir-153-P2 Mgi-Mir-153 Mml-Mir-153-P2 Mmr-Mir-153-P2 Mom-Mir-153 Mun-Mir-153-P2 Neu-Mir-153-P2 Npo-Mir-153 Oan-Mir-153-P2 Obi-Mir-153 Ofu-Mir-153 Ovu-Mir-153 Pab-Mir-153-P2 Pau-Mir-153 Pbv-Mir-153-P2 Pca-Mir-153 Pcr-Mir-153 Pdu-Mir-153 Pfl-Mir-153 Pma-Mir-153-o2 Pmi-Mir-153 Pve-Mir-153 Rph-Mir-153 Sha-Mir-153-P2 Sko-Mir-153 Sme-Mir-153 Snu-Mir-153 Spt-Mir-153-P2 Spu-Mir-153 Sto-Mir-153-P2 Tgu-Mir-153-P2 Tur-Mir-153 War-Mir-153 Xbo-Mir-153 Xtr-Mir-153-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

2: 15371791-15371849 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUAUGGUUUGUGUUUUACCAUCUCCCAGUGUCAUUUUUGUGGUUUGCAGCUAGUACUCUGGCUCCAGUUGCAUAGUCACAAAAAUGAGCAUUGGCAGGUGUGACUGGCUGCUGCAGGAG

Get precursor sequence

Structure

        10         20        30         40         50        
UUAUGGUUUGUGUUUUAC-     C      -           GU -|      AGUACU 
                   CAUCU CCAGUG UCAUUUUUGUG  U UGCAGCU      C
                   GUGGA GGUUAC AGUAAAAACAC  A ACGUUGA      U
GAGGACGUCGUCGGUCAGU     C      G           UG U^      CCUCGG 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-153-P2a_5p* (predicted)

mirBase accession

None

Sequence

0- UCAUUUUUGUGGUUUGCAGCU -21

Get sequence

Mature sequence

Tni-Mir-153-P2a_3p

mirBase accession

MIMAT0003002

Sequence

37- UUGCAUAGUCACAAAAAUGAGC -59

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