Mir-153-P2a

MirGeneDB ID

Gmo-Mir-153-P2a

Family name

MIR-153 (all species)

Seed

UGCAUAG

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-153b

Paralogues

Gmo-Mir-153-P1a Gmo-Mir-153-P1b

Orthologues

Aca-Mir-153-P2 Agr-Mir-153 Ami-Mir-153-P2 Asu-Mir-153 Bfl-Mir-153 Bko-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P2 Cfa-Mir-153-P2 Cin-Mir-153 Cja-Mir-153-P2 Cli-Mir-153-P2 Cmi-Mir-153-P2 Cpi-Mir-153-P2 Cte-Mir-153 Dgr-Mir-153 Dma-Mir-153 Dno-Mir-153-P2 Dpu-Mir-153 Dre-Mir-153-P2a Eba-Mir-153 Eca-Mir-153-P2 Egr-Mir-153 Gga-Mir-153-P2 Gja-Mir-153-P2 Gsa-Mir-153 Gsp-Mir-153 Hmi-Mir-153 Hru-Mir-153 Hsa-Mir-153-P2 Isc-Mir-153 Laf-Mir-153-P2 Lan-Mir-153 Lch-Mir-153-P2 Lgi-Mir-153 Llo-Mir-153 Loc-Mir-153-P2 Mal-Mir-153-P2a Mdo-Mir-153-P2 Mgi-Mir-153 Mml-Mir-153-P2 Mmr-Mir-153-P2 Mom-Mir-153 Mun-Mir-153-P2 Neu-Mir-153-P2 Npo-Mir-153 Oan-Mir-153-P2 Obi-Mir-153 Ofu-Mir-153 Ovu-Mir-153 Pab-Mir-153-P2 Pau-Mir-153 Pbv-Mir-153-P2 Pca-Mir-153 Pcr-Mir-153 Pdu-Mir-153 Pfl-Mir-153 Pma-Mir-153-o2 Pmi-Mir-153 Pve-Mir-153 Rph-Mir-153 Sha-Mir-153-P2 Sko-Mir-153 Sme-Mir-153 Snu-Mir-153 Spt-Mir-153-P2 Spu-Mir-153 Sto-Mir-153-P2 Tgu-Mir-153-P2 Tni-Mir-153-P2a Tur-Mir-153 War-Mir-153 Xbo-Mir-153 Xtr-Mir-153-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_1359: 207512-207571 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCGGUGGCUUAUAUCUGCACAUCUCUCAGUGUCAUUUUUGUGGUUUGCAGCUAGUACUCUGGCUCCAGUUGCAUAGUCACAAAAAUGAGCAUUGGCAGGUGUGACUGGCUACUGCAGAAG

Get precursor sequence

Structure

        10        20        30         40         50         
UCGGUGGCUUAUAUCUGC      C      -           GU -|      AGUACU 
                  ACAUCU UCAGUG UCAUUUUUGUG  U UGCAGCU      C
                  UGUGGA GGUUAC AGUAAAAACAC  A ACGUUGA      U
GAAGACGUCAUCGGUCAG      C      G           UG U^      CCUCGG 
.       110       100        90        80        70        60