MirGeneDB ID | Gmo-Mir-153-P2a |
Family name |
MIR-153 (all species) |
Seed |
UGCAUAG |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-153b
|
Paralogues |
Gmo-Mir-153-P1a
Gmo-Mir-153-P1b
|
Orthologues |
Aca-Mir-153-P2
Ami-Mir-153-P2
Asu-Mir-153
Bfl-Mir-153
Bla-Mir-153
Bpl-Mir-153
Bta-Mir-153-P2
Cfa-Mir-153-P2
Cgi-Mir-153
Cin-Mir-153
Cli-Mir-153-P2
Cmi-Mir-153-P2
Cpi-Mir-153-P2
Cte-Mir-153
Dma-Mir-153
Dno-Mir-153-P2
Dpu-Mir-153
Dre-Mir-153-P2a
Gga-Mir-153-P2
Gja-Mir-153-P2
Hsa-Mir-153-P2
Isc-Mir-153
Lan-Mir-153
Lch-Mir-153-P2
Lgi-Mir-153
Loc-Mir-153-P2
Mal-Mir-153-P2a
Mdo-Mir-153-P2
Mml-Mir-153-P2
Mun-Mir-153-P2
Npo-Mir-153
Oan-Mir-153-P2
Obi-Mir-153
Ovu-Mir-153
Pbv-Mir-153-P2
Pfl-Mir-153
Pma-Mir-153-o2
Pmi-Mir-153
Sha-Mir-153-P2
Sko-Mir-153
Sme-Mir-153
Spt-Mir-153-P2
Spu-Mir-153
Sto-Mir-153-P2
Tgu-Mir-153-P2
Tni-Mir-153-P2a
Xbo-Mir-153
Xtr-Mir-153-P2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1359: 207512-207571 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCGGUGGCUUAUAUCUGCACAUCUCUCAGUGUCAUUUUUGUGGUUUGCAGCUAGUACUCUGGCUCCAGUUGCAUAGUCACAAAAAUGAGCAUUGGCAGGUGUGACUGGCUACUGCAGAAG
Get precursor sequence
|
Structure | 10 20 30 40 50
UCGGUGGCUUAUAUCUGC C - GU -| AGUACU
ACAUCU UCAGUG UCAUUUUUGUG U UGCAGCU C
UGUGGA GGUUAC AGUAAAAACAC A ACGUUGA U
GAAGACGUCAUCGGUCAG C G UG U^ CCUCGG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Gmo-Mir-153-P2a_5p* |
mirBase accession | MIMAT0044117 |
Sequence |
0- GUCAUUUUUGUGGUUUGCAGCU -22
Get sequence
|
Mature sequence |
Gmo-Mir-153-P2a_3p |
mirBase accession | MIMAT0044118 |
Sequence |
38- UUGCAUAGUCACAAAAAUGAGC -60
Get sequence
|