Mir-153-P1b

MirGeneDB ID

Gmo-Mir-153-P1b

Family name

MIR-153 (all species)

Seed

UGCAUAG

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-153a-1

Paralogues

Gmo-Mir-153-P1a Gmo-Mir-153-P2a

Orthologues

Aca-Mir-153-P1 Ami-Mir-153-P1 Asu-Mir-153 Bfl-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P1 Cfa-Mir-153-P1 Cgi-Mir-153 Cin-Mir-153 Cli-Mir-153-P1 Cmi-Mir-153-P1 Cpi-Mir-153-P1 Cpo-Mir-153-P1 Cte-Mir-153 Dma-Mir-153 Dno-Mir-153-P1 Dpu-Mir-153 Ete-Mir-153-P1 Gga-Mir-153-P1 Gja-Mir-153-P1 Hsa-Mir-153-P1 Isc-Mir-153 Lan-Mir-153 Lch-Mir-153-P1 Lgi-Mir-153 Loc-Mir-153-P1 Mal-Mir-153-P1b Mdo-Mir-153-P1 Mml-Mir-153-P1 Mmu-Mir-153-P1 Mun-Mir-153-P1 Npo-Mir-153 Oan-Mir-153-P1 Obi-Mir-153 Ocu-Mir-153-P1 Ovu-Mir-153 Pbv-Mir-153-P1 Pfl-Mir-153 Pma-Mir-153-o1 Pmi-Mir-153 Rno-Mir-153-P1 Sha-Mir-153-P1 Sko-Mir-153 Sme-Mir-153 Spt-Mir-153-P1 Spu-Mir-153 Sto-Mir-153-P1 Tgu-Mir-153-P1 Tni-Mir-153-P1b Xbo-Mir-153 Xtr-Mir-153-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_3123: 32539-32598 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUUCCAGCUCUCUCCAGCGGUCGCCGGUGUCAUUUUUGUGAUGUUGCAGCUAGUAUUAUGAGCCCAGUUGCAUAGUCACAAAAGUGAUCAUUGGAGACUGUGACUCUGCAACCCAGGGG

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Structure

        10         20        30         40        50         
UGUUCCAGCUCUCUCCA-      G      -|            GU       AGUAUU 
                  GCGGUC CCGGUG UCAUUUUUGUGAU  UGCAGCU      A
                  UGUCAG GGUUAC AGUGAAAACACUG  ACGUUGA      U
GGGGACCCAACGUCUCAG      A      U^            AU       CCCGAG 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Star sequence

Gmo-Mir-153-P1b_5p*

mirBase accession

None

Sequence

0- UCAUUUUUGUGAUGUUGCAGCU -22

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Mature sequence

Gmo-Mir-153-P1b_3p

mirBase accession

MIMAT0044210

Sequence

38- UUGCAUAGUCACAAAAGUGAUC -60

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