Mir-153-P1

MirGeneDB ID

Rno-Mir-153-P1

Family name

MIR-153 (all species)

Seed

UGCAUAG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-153

Paralogues

Orthologues

Aca-Mir-153-P1 Agr-Mir-153 Ami-Mir-153-P1 Asu-Mir-153 Bfl-Mir-153 Bko-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P1 Cfa-Mir-153-P1 Cin-Mir-153 Cja-Mir-153-P1 Cli-Mir-153-P1 Cmi-Mir-153-P1 Cpi-Mir-153-P1 Cpo-Mir-153-P1 Cte-Mir-153 Dgr-Mir-153 Dma-Mir-153 Dno-Mir-153-P1 Dpu-Mir-153 Dre-Mir-153-P1a Eba-Mir-153 Eca-Mir-153-P1 Egr-Mir-153 Ete-Mir-153-P1 Gga-Mir-153-P1 Gja-Mir-153-P1 Gmo-Mir-153-P1a Gmo-Mir-153-P1b Gsa-Mir-153 Gsp-Mir-153 Hmi-Mir-153 Hru-Mir-153 Hsa-Mir-153-P1 Isc-Mir-153 Laf-Mir-153-P1 Lan-Mir-153 Lch-Mir-153-P1 Lgi-Mir-153 Llo-Mir-153 Loc-Mir-153-P1 Mal-Mir-153-P1a Mal-Mir-153-P1b Mdo-Mir-153-P1 Mgi-Mir-153 Mml-Mir-153-P1 Mmr-Mir-153-P1 Mmu-Mir-153-P1 Mom-Mir-153 Mun-Mir-153-P1 Npo-Mir-153 Oan-Mir-153-P1 Obi-Mir-153 Ocu-Mir-153-P1 Ofu-Mir-153 Ovu-Mir-153 Pab-Mir-153-P1 Pau-Mir-153 Pbv-Mir-153-P1 Pca-Mir-153 Pcr-Mir-153 Pdu-Mir-153 Pfl-Mir-153 Pma-Mir-153-o1 Pmi-Mir-153 Pve-Mir-153 Rph-Mir-153 Sha-Mir-153-P1 Sko-Mir-153 Sme-Mir-153 Snu-Mir-153 Spt-Mir-153-P1 Spu-Mir-153 Sto-Mir-153-P1 Tgu-Mir-153-P1 Tni-Mir-153-P1b Tur-Mir-153 War-Mir-153 Xbo-Mir-153 Xla-Mir-153-P1c Xla-Mir-153-P1d Xtr-Mir-153-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr6: 145105077-145105137 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UACUUUGCCAGCUACUUAGCGGUGGCCAGUGUCAUUUUUGUGAUGUUGCAGCUAGUAAUAUGAGCCCAGUUGCAUAGUCACAAAAGUGAUCAUUGGAAACUGUGACUGCAGCAGGGACAUG

Get precursor sequence

Structure

        10        20        30         40        50        60
UACUUUGCCAGCUACUUA     GG      -|            GU       AGUAAU 
                  GCGGU  CCAGUG UCAUUUUUGUGAU  UGCAGCU      A
                  UGUCA  GGUUAC AGUGAAAACACUG  ACGUUGA      U
GUACAGGGACGACGUCAG     AA      U^            AU       CCCGAG 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-153-P1_5p*

mirBase accession

MIMAT0017135

Sequence

0- GUCAUUUUUGUGAUGUUGCAGCU -23

Get sequence

Proposed targets

TargetScanVert: rno-miR-153-5p
miRDB: MIMAT0017135

Mature sequence

Rno-Mir-153-P1_3p

mirBase accession

MIMAT0000855

Sequence

39- UUGCAUAGUCACAAAAGUGAUC -61

Get sequence

Proposed targets

microrna.org: MIMAT0000855
TargetScanVert: rno-miR-153-3p
miRDB: MIMAT0000855