Mir-153-P1b

MirGeneDB ID

Tni-Mir-153-P1b

Family name

MIR-153 (all species)

Seed

UGCAUAG

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-153a

Paralogues

Tni-Mir-153-P2a Tni-Mir-153-P2b

Orthologues

Aca-Mir-153-P1 Agr-Mir-153 Ami-Mir-153-P1 Asu-Mir-153 Bfl-Mir-153 Bko-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P1 Cfa-Mir-153-P1 Cin-Mir-153 Cja-Mir-153-P1 Cli-Mir-153-P1 Cmi-Mir-153-P1 Cpi-Mir-153-P1 Cpo-Mir-153-P1 Cte-Mir-153 Dgr-Mir-153 Dma-Mir-153 Dno-Mir-153-P1 Dpu-Mir-153 Eba-Mir-153 Eca-Mir-153-P1 Egr-Mir-153 Ete-Mir-153-P1 Gga-Mir-153-P1 Gja-Mir-153-P1 Gmo-Mir-153-P1b Gsa-Mir-153 Gsp-Mir-153 Hmi-Mir-153 Hru-Mir-153 Hsa-Mir-153-P1 Isc-Mir-153 Laf-Mir-153-P1 Lan-Mir-153 Lch-Mir-153-P1 Lgi-Mir-153 Llo-Mir-153 Loc-Mir-153-P1 Mal-Mir-153-P1b Mdo-Mir-153-P1 Mgi-Mir-153 Mml-Mir-153-P1 Mmr-Mir-153-P1 Mmu-Mir-153-P1 Mom-Mir-153 Mun-Mir-153-P1 Npo-Mir-153 Oan-Mir-153-P1 Obi-Mir-153 Ocu-Mir-153-P1 Ofu-Mir-153 Ovu-Mir-153 Pab-Mir-153-P1 Pau-Mir-153 Pbv-Mir-153-P1 Pca-Mir-153 Pcr-Mir-153 Pdu-Mir-153 Pfl-Mir-153 Pma-Mir-153-o1 Pmi-Mir-153 Pve-Mir-153 Rno-Mir-153-P1 Rph-Mir-153 Sha-Mir-153-P1 Sko-Mir-153 Sme-Mir-153 Snu-Mir-153 Spt-Mir-153-P1 Spu-Mir-153 Sto-Mir-153-P1 Tgu-Mir-153-P1 Tur-Mir-153 War-Mir-153 Xbo-Mir-153 Xtr-Mir-153-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

15: 948753-948813 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCUUACCAGCUAAACUAGCGGUUGCCAGUGUCAUUUUUUGUGAUGUUGCAGCUAGUAAUAUAAGCCAAGUUGCAUAGUCACAAAAGUGAUCAUUGGAAACUGUGACUCUGCAACCAGGGGG

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Structure

        10         20        30         40        50        60
UCUUACCAGCUAAACUA-      G      -|       U     GU       AGUAAU 
                  GCGGUU CCAGUG UCAUUUUU GUGAU  UGCAGCU      A
                  UGUCAA GGUUAC AGUGAAAA CACUG  ACGUUGA      U
GGGGGACCAACGUCUCAG      A      U^       -     AU       ACCGAA 
 .       110       100        90         80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-153-P1b_5p* (predicted)

mirBase accession

None

Sequence

0- UCAUUUUUUGUGAUGUUGCAGCU -23

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Mature sequence

Tni-Mir-153-P1b_3p

mirBase accession

MIMAT0003012

Sequence

39- UUGCAUAGUCACAAAAGUGAUC -61

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