Mir-153-P1

MirGeneDB ID

Gga-Mir-153-P1

Family name

MIR-153 (all species)

Seed

UGCAUAG

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-153

Paralogues

Gga-Mir-153-P2

Orthologues

Aca-Mir-153-P1 Agr-Mir-153 Ami-Mir-153-P1 Asu-Mir-153 Bfl-Mir-153 Bko-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P1 Cfa-Mir-153-P1 Cin-Mir-153 Cja-Mir-153-P1 Cli-Mir-153-P1 Cmi-Mir-153-P1 Cpi-Mir-153-P1 Cpo-Mir-153-P1 Cte-Mir-153 Dgr-Mir-153 Dma-Mir-153 Dno-Mir-153-P1 Dpu-Mir-153 Dre-Mir-153-P1a Eba-Mir-153 Eca-Mir-153-P1 Egr-Mir-153 Ete-Mir-153-P1 Gja-Mir-153-P1 Gmo-Mir-153-P1a Gmo-Mir-153-P1b Gsa-Mir-153 Gsp-Mir-153 Hmi-Mir-153 Hru-Mir-153 Hsa-Mir-153-P1 Isc-Mir-153 Laf-Mir-153-P1 Lan-Mir-153 Lch-Mir-153-P1 Lgi-Mir-153 Llo-Mir-153 Loc-Mir-153-P1 Mal-Mir-153-P1a Mal-Mir-153-P1b Mdo-Mir-153-P1 Mgi-Mir-153 Mml-Mir-153-P1 Mmr-Mir-153-P1 Mmu-Mir-153-P1 Mom-Mir-153 Mun-Mir-153-P1 Npo-Mir-153 Oan-Mir-153-P1 Obi-Mir-153 Ocu-Mir-153-P1 Ofu-Mir-153 Ovu-Mir-153 Pab-Mir-153-P1 Pau-Mir-153 Pbv-Mir-153-P1 Pca-Mir-153 Pcr-Mir-153 Pdu-Mir-153 Pfl-Mir-153 Pma-Mir-153-o1 Pmi-Mir-153 Pve-Mir-153 Rno-Mir-153-P1 Rph-Mir-153 Sha-Mir-153-P1 Sko-Mir-153 Sme-Mir-153 Snu-Mir-153 Spt-Mir-153-P1 Spu-Mir-153 Sto-Mir-153-P1 Tgu-Mir-153-P1 Tni-Mir-153-P1b Tur-Mir-153 War-Mir-153 Xbo-Mir-153 Xla-Mir-153-P1c Xla-Mir-153-P1d Xtr-Mir-153-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

2: 8899858-8899918 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAUUUUGCCAGCUAAUUAGCGGUUGCCAGUGUCAUUUUUGUGAUGUUGCAGCUAGUAAUAUGAGCCCAGUUGCAUAGUCACAAAAGUGAUCAUUGGAAACUGUGACUCUGCUGCAGGGACA

Get precursor sequence

Structure

        10        20        30         40        50        60
UAUUUUGCCAGCUAAUUA      G      -|            GU       AGUAAU 
                  GCGGUU CCAGUG UCAUUUUUGUGAU  UGCAGCU      A
                  UGUCAA GGUUAC AGUGAAAACACUG  ACGUUGA      U
ACAGGGACGUCGUCUCAG      A      U^            AU       CCCGAG 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-153-P1_5p*

mirBase accession

MIMAT0026502

Sequence

0- GUCAUUUUUGUGAUGUUGCAGCU -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-153-5p
miRDB: MIMAT0026502

Mature sequence

Gga-Mir-153-P1_3p

mirBase accession

MIMAT0001119

Sequence

39- UUGCAUAGUCACAAAAGUGAUC -61

Get sequence

Proposed targets

TargetScanVert: gga-miR-153-3p
miRDB: MIMAT0001119