Mir-153-P1a

MirGeneDB ID

Gmo-Mir-153-P1a

Family name

MIR-153 (all species)

Seed

UGCAUAG

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-153a-2

Paralogues

Gmo-Mir-153-P1b Gmo-Mir-153-P2a

Orthologues

Aca-Mir-153-P1 Agr-Mir-153 Ami-Mir-153-P1 Asu-Mir-153 Bfl-Mir-153 Bko-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P1 Cfa-Mir-153-P1 Cin-Mir-153 Cja-Mir-153-P1 Cli-Mir-153-P1 Cmi-Mir-153-P1 Cpi-Mir-153-P1 Cpo-Mir-153-P1 Cte-Mir-153 Dgr-Mir-153 Dma-Mir-153 Dno-Mir-153-P1 Dpu-Mir-153 Dre-Mir-153-P1a Eba-Mir-153 Eca-Mir-153-P1 Egr-Mir-153 Ete-Mir-153-P1 Gga-Mir-153-P1 Gja-Mir-153-P1 Gsa-Mir-153 Gsp-Mir-153 Hmi-Mir-153 Hru-Mir-153 Hsa-Mir-153-P1 Isc-Mir-153 Laf-Mir-153-P1 Lan-Mir-153 Lch-Mir-153-P1 Lgi-Mir-153 Llo-Mir-153 Loc-Mir-153-P1 Mal-Mir-153-P1a Mdo-Mir-153-P1 Mgi-Mir-153 Mml-Mir-153-P1 Mmr-Mir-153-P1 Mmu-Mir-153-P1 Mom-Mir-153 Mun-Mir-153-P1 Npo-Mir-153 Oan-Mir-153-P1 Obi-Mir-153 Ocu-Mir-153-P1 Ofu-Mir-153 Ovu-Mir-153 Pab-Mir-153-P1 Pau-Mir-153 Pbv-Mir-153-P1 Pca-Mir-153 Pcr-Mir-153 Pdu-Mir-153 Pfl-Mir-153 Pma-Mir-153-o1 Pmi-Mir-153 Pve-Mir-153 Rno-Mir-153-P1 Rph-Mir-153 Sha-Mir-153-P1 Sko-Mir-153 Sme-Mir-153 Snu-Mir-153 Spt-Mir-153-P1 Spu-Mir-153 Sto-Mir-153-P1 Tgu-Mir-153-P1 Tur-Mir-153 War-Mir-153 Xbo-Mir-153 Xtr-Mir-153-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_3129: 46261-46320 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGACCCCUUGCUGUGUGGCGGUUGCCAGUGUCAUUUUUGUGAUGUUGCAGCUCGUAAUAUGAGCCCAGUUGCAUAGUCACAAAAGUGAUCAUUGGAGACUGCAUCUUCCCUGCCAGCACU

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Structure

        10         20        30         40        50         
GGACCCCUUGCUGUGUG-     UG      -|            GU       CGUAAU 
                  GCGGU  CCAGUG UCAUUUUUGUGAU  UGCAGCU      A
                  CGUCA  GGUUAC AGUGAAAACACUG  ACGUUGA      U
UCACGACCGUCCCUUCUA     GA      U^            AU       CCCGAG 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Star sequence

Gmo-Mir-153-P1a_5p*

mirBase accession

None

Sequence

0- UCAUUUUUGUGAUGUUGCAGCU -22

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Mature sequence

Gmo-Mir-153-P1a_3p

mirBase accession

MIMAT0044210

Sequence

38- UUGCAUAGUCACAAAAGUGAUC -60

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