Mir-153-P2d

MirGeneDB ID

Xla-Mir-153-P2d

Family name

MIR-153 (all species)

Seed

UGCAUAG

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-153-P1c Xla-Mir-153-P1d Xla-Mir-153-P2c

Orthologues

Aca-Mir-153-P2 Agr-Mir-153 Ami-Mir-153-P2 Asu-Mir-153 Bfl-Mir-153 Bko-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P2 Cfa-Mir-153-P2 Cin-Mir-153 Cja-Mir-153-P2 Cli-Mir-153-P2 Cmi-Mir-153-P2 Cpi-Mir-153-P2 Cte-Mir-153 Dgr-Mir-153 Dma-Mir-153 Dno-Mir-153-P2 Dpu-Mir-153 Eba-Mir-153 Eca-Mir-153-P2 Egr-Mir-153 Gga-Mir-153-P2 Gja-Mir-153-P2 Gsa-Mir-153 Gsp-Mir-153 Hmi-Mir-153 Hru-Mir-153 Hsa-Mir-153-P2 Isc-Mir-153 Laf-Mir-153-P2 Lan-Mir-153 Lch-Mir-153-P2 Lgi-Mir-153 Llo-Mir-153 Loc-Mir-153-P2 Mdo-Mir-153-P2 Mgi-Mir-153 Mml-Mir-153-P2 Mmr-Mir-153-P2 Mom-Mir-153 Mun-Mir-153-P2 Neu-Mir-153-P2 Npo-Mir-153 Oan-Mir-153-P2 Obi-Mir-153 Ofu-Mir-153 Ovu-Mir-153 Pab-Mir-153-P2 Pau-Mir-153 Pbv-Mir-153-P2 Pca-Mir-153 Pcr-Mir-153 Pdu-Mir-153 Pfl-Mir-153 Pma-Mir-153-o2 Pmi-Mir-153 Pve-Mir-153 Rph-Mir-153 Sha-Mir-153-P2 Sko-Mir-153 Sme-Mir-153 Snu-Mir-153 Spt-Mir-153-P2 Spu-Mir-153 Sto-Mir-153-P2 Tgu-Mir-153-P2 Tur-Mir-153 War-Mir-153 Xbo-Mir-153 Xtr-Mir-153-P2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030740.1: 51410565-51410624 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAAUCCUACAGAGCUCAUGGCUGCCCUUGUCAUUUUUGUGAUUUGCAGCUUGUAAUUUUGGUCUCAGUUGCAUAGUCACAAAAGUGAUCAUGGGCAGGUGGGGCAGCAUCGCUUUGGGU

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Structure

        10        20         30         40         50         
GGAAUCCUACAGAGCUCAUGG-      U  -              -|      UGUAAUU 
                      CUGCCC UG UCAUUUUUGUGAUU UGCAGCU       \
                      GACGGG AC AGUGAAAACACUGA ACGUUGA       U
UGGGUUUCGCUACGACGGGGUG      U  U              U^      CUCUGGU 
.       110       100        90        80        70        60

Deep sequencing

Comment

There is a second Drosha cut -1 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Em

Star sequence

Xla-Mir-153-P2d_5p* (predicted)

mirBase accession

None

Sequence

0- UCAUUUUUGUGAUUUGCAGCU -21

Get sequence

Mature sequence

Xla-Mir-153-P2d_3p

mirBase accession

None

Sequence

38- UUGCAUAGUCACAAAAGUGAUC -60

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