MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-153-P2c

Family name MIR-153 (all species)
Seed UGCAUAG
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-153-P1c  Xla-Mir-153-P1d  Xla-Mir-153-P2d 
Orthologues Aca-Mir-153-P2  Agr-Mir-153  Ami-Mir-153-P2  Asu-Mir-153  Bfl-Mir-153  Bko-Mir-153  Bla-Mir-153  Bpl-Mir-153  Bta-Mir-153-P2  Cfa-Mir-153-P2  Cin-Mir-153  Cja-Mir-153-P2  Cli-Mir-153-P2  Cmi-Mir-153-P2  Cpi-Mir-153-P2  Cte-Mir-153  Dgr-Mir-153  Dma-Mir-153  Dno-Mir-153-P2  Dpu-Mir-153  Eba-Mir-153  Eca-Mir-153-P2  Egr-Mir-153  Gga-Mir-153-P2  Gja-Mir-153-P2  Gsa-Mir-153  Gsp-Mir-153  Hmi-Mir-153  Hru-Mir-153  Hsa-Mir-153-P2  Isc-Mir-153  Laf-Mir-153-P2  Lan-Mir-153  Lch-Mir-153-P2  Lgi-Mir-153  Llo-Mir-153  Loc-Mir-153-P2  Mdo-Mir-153-P2  Mgi-Mir-153  Mml-Mir-153-P2  Mmr-Mir-153-P2  Mom-Mir-153  Mun-Mir-153-P2  Neu-Mir-153-P2  Npo-Mir-153  Oan-Mir-153-P2  Obi-Mir-153  Ofu-Mir-153  Ovu-Mir-153  Pab-Mir-153-P2  Pau-Mir-153  Pbv-Mir-153-P2  Pca-Mir-153  Pcr-Mir-153  Pdu-Mir-153  Pfl-Mir-153  Pma-Mir-153-o2  Pmi-Mir-153  Pve-Mir-153  Rph-Mir-153  Sha-Mir-153-P2  Sko-Mir-153  Sme-Mir-153  Snu-Mir-153  Spt-Mir-153-P2  Spu-Mir-153  Sto-Mir-153-P2  Tgu-Mir-153-P2  Tur-Mir-153  War-Mir-153  Xbo-Mir-153  Xtr-Mir-153-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030741.1: 46741069-46741128 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAAUCCCUAAGAGCUCAUGGCUGCCCAUGUCAUUUUUGUGAUUUGCAGCUUGUAAUUUUGGUCUCAGUUGCAUAGUCACAAAAGUGAUCAUGGGCAGGUGGGGCAGCAUCGCUUUGGGU
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Structure
        10        20         30         40         50         
GGAAUCCCUAAGAGCUCAUGG-         -              -|      UGUAAUU 
                      CUGCCCAUG UCAUUUUUGUGAUU UGCAGCU       \
                      GACGGGUAC AGUGAAAACACUGA ACGUUGA       U
UGGGUUUCGCUACGACGGGGUG         U              U^      CUCUGGU 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-153-P2c_5p* (predicted)
mirBase accessionNone
Sequence 
0- UCAUUUUUGUGAUUUGCAGCU -21
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Mature sequence

Xla-Mir-153-P2c_3p
mirBase accessionNone
Sequence 
38- UUGCAUAGUCACAAAAGUGAUC -60
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