Mir-153-P2b

MirGeneDB ID

Mal-Mir-153-P2b

Family name

MIR-153 (all species)

Seed

UGCAUAG

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-153-P1a Mal-Mir-153-P1b Mal-Mir-153-P2a

Orthologues

Aca-Mir-153-P2 Ami-Mir-153-P2 Asu-Mir-153 Bfl-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P2 Cfa-Mir-153-P2 Cgi-Mir-153 Cin-Mir-153 Cli-Mir-153-P2 Cmi-Mir-153-P2 Cpi-Mir-153-P2 Cte-Mir-153 Dma-Mir-153 Dno-Mir-153-P2 Dpu-Mir-153 Dre-Mir-153-P2b Gga-Mir-153-P2 Gja-Mir-153-P2 Hsa-Mir-153-P2 Isc-Mir-153 Lan-Mir-153 Lch-Mir-153-P2 Lgi-Mir-153 Loc-Mir-153-P2 Mdo-Mir-153-P2 Mml-Mir-153-P2 Mun-Mir-153-P2 Npo-Mir-153 Oan-Mir-153-P2 Obi-Mir-153 Ovu-Mir-153 Pbv-Mir-153-P2 Pfl-Mir-153 Pma-Mir-153-o2 Pmi-Mir-153 Sha-Mir-153-P2 Sko-Mir-153 Sme-Mir-153 Spt-Mir-153-P2 Spu-Mir-153 Sto-Mir-153-P2 Tgu-Mir-153-P2 Tni-Mir-153-P2b Xbo-Mir-153 Xtr-Mir-153-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884704.1: 299430-299488 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGGUUUCAUGUUGAACAUGUCUGUCUGUGUCAUUCUUGUGGUUUGCAGCUAGUAGUCUGGCUCCAGUUGCAUAGUCACAAAAAUGAUCAUGGACUGAUGUGGCUGCAGCAGGAGGUCC

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Structure

        10         20        30         40         50        
UUGGUUUCAUGUUGAAC-     U       -     C     GU -|      AGUAGU 
                  AUGUC GUCUGUG UCAUU UUGUG  U UGCAGCU      C
                  UGUAG CAGGUAC AGUAA AACAC  A ACGUUGA      U
CCUGGAGGACGACGUCGG     U       U     A     UG U^      CCUCGG 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-153-P2b_5p*

mirBase accession

None

Sequence

0- UCAUUCUUGUGGUUUGCAGCU -21

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Mature sequence

Mal-Mir-153-P2b_3p

mirBase accession

None

Sequence

37- UUGCAUAGUCACAAAAAUGAUC -59

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