Mir-181-P1o1

MirGeneDB ID

Pma-Mir-181-P1o1

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-181a

Paralogues

Pma-Mir-181-P1o2 Pma-Mir-181-P2o1 Pma-Mir-181-P2o2

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046090.1: 2946536-2946600 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1o1)

Mir-181-P2o1 NC_046090.1: 2942239-2942311 [-] UCSC Ensembl
Mir-181-P1o1 NC_046090.1: 2946536-2946600 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGUUGCUUCGCACAAACGGGGGUCUCGAUGAACAUUCAACGCUGUCGGUGAGUUUUGUUCUUCCCGACCUUAAACCAUCGACCGUUGACUGUACCUCGCCACCUGCCACACUCCGCCAAGUCUGA

Get precursor sequence

Structure

        10          20        30        40        50        60   
AGUUGCUUCGCACAAAC-  -|   CU   UGA   U      CU       A  UUUGUUCUU 
                  GG GGGU  CGA   ACA UCAACG  GUCGGUG GU         C
                  CC UCCA  GCU   UGU AGUUGC  CAGCUAC CA         C
AGUCUGAACCGCCUCACA  G^   CC   CCA   C      --       -  AAUUCCAGC 
   120       110       100        90          80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-181-P1o1_5p

mirBase accession

MIMAT0019486

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

Get sequence

Star sequence

Pma-Mir-181-P1o1_3p*

mirBase accession

MIMAT0019487

Sequence

43- ACCAUCGACCGUUGACUGUACC -65

Get sequence