MirGeneDB 3.0

MirGeneDB ID

Pma-Mir-218-o1

Family name MIR-218 (all species)
Seed UGUGCUU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-218a-1
Paralogues Pma-Mir-218-o2  Pma-Mir-218-o3 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046098.1: 3240022-3240078 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGAUCCCAGAAAGACGGCCGUCCCUGCCUUGUGCUUGAUCUAACCAUGUGCUGCCCCAAACAACAUGGUUUGUUCAUGCACCAGGUAGAGGCAUGCCCUUUCUUCCUCCAGGCGG
Get precursor sequence
Structure
        10         20         30        40        50        
GAAGAUCCCAGAAAGAC-   C-|  C      U    U   UCU        GCUGCC 
                  GGC  GUC CUGCCU GUGC UGA   AACCAUGU      \
                  CCG  CGG GAUGGA CACG ACU   UUGGUACA      C
GGCGGACCUCCUUCUUUC   UA^  A      C    U   UGU        ACAAAC 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-218-o1_5p

mirBase accessionMIMAT0019529
Sequence
0- UUGUGCUUGAUCUAACCAUGUG -22
Get sequence
Star sequence

Pma-Mir-218-o1_3p* (predicted)

mirBase accessionMIMAT0019530
Sequence
35- CAUGGUUUGUUCAUGCACCAGG -57
Get sequence