| MirGeneDB ID | Pma-Mir-218-o3 |
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| Family name |
MIR-218 (all species) |
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| Seed |
UGUGCUU |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-218b
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| Paralogues |
Pma-Mir-218-o1
Pma-Mir-218-o2
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| Orthologues |
Dre-Mir-218-P3
Gmo-Mir-218-P3
Lch-Mir-218-P3
Loc-Mir-218-P3
Mal-Mir-218-P3
Tni-Mir-218-P3
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| Node of Origin (locus) |
P. marinus
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046079.1: 14082498-14082561 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCUCCUCAUGGAUCCCCGCGCGGUUUUCCGUUGUGCUUGAUCUAACCAUGCGAUGGGGAGCUACAGUAACACCAUGGUUCUGUCAAGCACCACGGGACGCCGCACAUGCGAGCUCCGCUAAACC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GCUCCUCAUGGAUCCCCGC--| U U CU CGAUGGGGAG
GCGGU UUCCGU GUGCUUGAU AACCAUG C
CGCCG AGGGCA CACGAACUG UUGGUAC U
CCAAAUCGCCUCGAGCGUACA^ C C UC CACAAUGACA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Unknown
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| Motifs | No |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Mature sequence |
Pma-Mir-218-o3_5p |
| mirBase accession | MIMAT0019531 |
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| Sequence |
0- UUGUGCUUGAUCUAACCAUGCG -22
Get sequence
|
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| Star sequence |
Pma-Mir-218-o3_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
42- CAUGGUUCUGUCAAGCACCACG -64
Get sequence
|
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