| MirGeneDB ID | Dre-Mir-218-P3 |
|---|
| Family name |
MIR-218 (all species) |
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| Seed |
UGUGCUU |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-218b
|
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| Paralogues |
Dre-Mir-218-P2
Dre-Mir-218-P4-v1
Dre-Mir-218-P4-v2
|
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| Orthologues |
Gmo-Mir-218-P3
Lch-Mir-218-P3
Loc-Mir-218-P3
Mal-Mir-218-P3
Pma-Mir-218-o3
Tni-Mir-218-P3
|
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(danRer11) |
chr10: 17695275-17695332 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAGGAGUUUCUGCUUUUGCCCAGGACACCAUUGUGCUUGAUCUAACCAUGCAGUUCCCUUUCUGUCCAUGGUUGUGCCAAGCACUUUGGAGACUUGUGUGCACUUUCUUCUGCCUUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAGGAGUUUCUGCUUUU--| C ACA UU AUC CAGUUCC
GC CAGG CCA GUGCUUG UAACCAUG C
UG GUUC GGU CACGAAC GUUGGUAC U
UUUUCCGUCUUCUUUCACG^ U AGA UU CGU CUGUCUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Mature sequence |
Dre-Mir-218-P3_5p |
| mirBase accession | MIMAT0001869 |
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| Sequence |
0- UUGUGCUUGAUCUAACCAUGC -21
Get sequence
|
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| Proposed targets |
TargetScanFish: dre-miR-218b
|
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| Star sequence |
Dre-Mir-218-P3_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- AUGGUUGUGCCAAGCACUUUG -58
Get sequence
|
|---|
