MirGeneDB 3.0

MirGeneDB ID

Loc-Mir-218-P3

Family name MIR-218 (all species)
Seed UGUGCUU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-218-P2  Loc-Mir-218-P4 
Orthologues Dre-Mir-218-P3  Gmo-Mir-218-P3  Lch-Mir-218-P3  Mal-Mir-218-P3  Pma-Mir-218-o3  Tni-Mir-218-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)
LG1: 7975230-7975287 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUUCAUACCCAACUCUUGCCCAGGACUCCAUUGUGCUUGAUCUAACCAUGUGAAUCUGCUGCUGCCCAUGGUGGAGCCAAGCACCCUGGAGAGCUGUGAGCAAUUUCCUCCUCUCCUC
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Structure
        10        20          30        40         50        
GUUCAUACCCAACUCUUGCC--   GA     UU       A-|   A     UGAAUCU 
                      CAG  CUCCA  GUGCUUG  UCUA CCAUG       G
                      GUC  GAGGU  CACGAAC  AGGU GGUAC       C
CUCCUCUCCUCCUUUAACGAGU   GA     CC       CG^   -     CCGUCGU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-218-P3_5p

mirBase accessionNone
Sequence
0- UUGUGCUUGAUCUAACCAUGUGA -23
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Star sequence

Loc-Mir-218-P3_3p* (predicted)

mirBase accessionNone
Sequence
36- CAUGGUGGAGCCAAGCACCCUG -58
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