MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-218-P3

Family name MIR-218 (all species)
Seed UGUGCUU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-218b
Paralogues Tni-Mir-218-P2  Tni-Mir-218-P4 
Orthologues Dre-Mir-218-P3  Gmo-Mir-218-P3  Lch-Mir-218-P3  Loc-Mir-218-P3  Mal-Mir-218-P3  Pma-Mir-218-o3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 4: 1554674-1554731 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-218-P3)		 Mir-130-P1a2 4: 1515785-1515843 [+] UCSC Ensembl
Mir-130-P2a2 4: 1516061-1516123 [+] UCSC Ensembl
Mir-218-P3 4: 1554674-1554731 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAAUGCCGCCGGCGUUGCCCAGGACCCCAUUGUGCUUGAUCUAACCAUGCAGUGCGUCCUGUGUCCAUGGUUGUGCCAAGCACCUUGGAGGCUUGUGAGCACUUUCCUCUAAGUUUU
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Structure
        10        20           30        40        50        
UGAAUGCCGCCGGCGUUGCC--|   A  -   UU       AUC        CAGUGCG 
                      CAGG CC CCA  GUGCUUG   UAACCAUG       U
                      GUUC GG GGU  CACGAAC   GUUGGUAC       C
UUUUGAAUCUCCUUUCACGAGU^   -  A   UC       CGU        CUGUGUC 
      110       100         90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-218-P3_5p
mirBase accessionMIMAT0002986
Sequence 
0- UUGUGCUUGAUCUAACCAUGCA -22
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Star sequence

Tni-Mir-218-P3_3p* (predicted)
mirBase accessionNone
Sequence 
36- CAUGGUUGUGCCAAGCACCUUG -58
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