MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-218-P4

Family name MIR-218 (all species)
Seed UGUGCUU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-218a-1
Paralogues Tni-Mir-218-P2  Tni-Mir-218-P3 
Orthologues Aca-Mir-218-P4  Ami-Mir-218-P4  Bta-Mir-218-P4  Cfa-Mir-218-P4  Cja-Mir-218-P4  Cli-Mir-218-P4  Cmi-Mir-218-P4  Cpi-Mir-218-P4  Cpo-Mir-218-P4  Dno-Mir-218-P4  Dre-Mir-218-P4-v1  Dre-Mir-218-P4-v2  Eca-Mir-218-P4  Ete-Mir-218-P4  Gga-Mir-218-P4  Gja-Mir-218-P4  Gmo-Mir-218-P4  Hsa-Mir-218-P4  Laf-Mir-218-P4  Lch-Mir-218-P4  Loc-Mir-218-P4  Mal-Mir-218-P4  Mdo-Mir-218-P4  Mml-Mir-218-P4  Mmr-Mir-218-P4  Mmu-Mir-218-P4  Oan-Mir-218-P4  Ocu-Mir-218-P4  Pab-Mir-218-P4  Pbv-Mir-218-P4  Rno-Mir-218-P4  Sha-Mir-218-P4  Spt-Mir-218-P4  Sto-Mir-218-P4  Tgu-Mir-218-P4  Xla-Mir-218-P4a  Xla-Mir-218-P4b  Xtr-Mir-218-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 1: 5655180-5655244 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAUUCUGAUUGGCUCGUGCGGCUGUCUCUUGUGCUUGAUCUAACCAUGUGGCCCCGCCUAUUGUGAAAUCACAUGGUUCCGUCAAGCGCCAGGGACCGCUGAGCACACACCCACCUGCCCCUC
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Structure
        10          20        30        40        50        60  
UGCAUUCUGAUUGGCUC--| G    U      U         CU         GCCCCGCCU 
                   GU CGGC GUCUCU GUGCUUGAU  AACCAUGUG         \
                   CG GUCG CAGGGA CGCGAACUG  UUGGUACAC         A
CUCCCCGUCCACCCACACA^ A    C      C         CC         UAAAGUGUU 
   120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-218-P4_5p
mirBase accessionMIMAT0002994
Sequence 
0- UUGUGCUUGAUCUAACCAUGUG -22
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Star sequence

Tni-Mir-218-P4_3p* (predicted)
mirBase accessionNone
Sequence 
43- CAUGGUUCCGUCAAGCGCCAGG -65
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