MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-218-P4

Family name MIR-218 (all species)
Seed UGUGCUU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-218a-2
Paralogues Rno-Mir-218-P2 
Orthologues Aca-Mir-218-P4  Ami-Mir-218-P4  Bta-Mir-218-P4  Cfa-Mir-218-P4  Cja-Mir-218-P4  Cli-Mir-218-P4  Cmi-Mir-218-P4  Cpi-Mir-218-P4  Cpo-Mir-218-P4  Dno-Mir-218-P4  Dre-Mir-218-P4-v1  Dre-Mir-218-P4-v2  Eca-Mir-218-P4  Ete-Mir-218-P4  Gga-Mir-218-P4  Gja-Mir-218-P4  Gmo-Mir-218-P4  Hsa-Mir-218-P4  Laf-Mir-218-P4  Lch-Mir-218-P4  Loc-Mir-218-P4  Mal-Mir-218-P4  Mdo-Mir-218-P4  Mml-Mir-218-P4  Mmr-Mir-218-P4  Mmu-Mir-218-P4  Oan-Mir-218-P4  Ocu-Mir-218-P4  Pab-Mir-218-P4  Pbv-Mir-218-P4  Sha-Mir-218-P4  Spt-Mir-218-P4  Sto-Mir-218-P4  Tgu-Mir-218-P4  Tni-Mir-218-P4  Xla-Mir-218-P4a  Xla-Mir-218-P4b  Xtr-Mir-218-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr10: 20428685-20428748 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACUCUGACCAGUUGCCGCGGGGCUUUCCUUUGUGCUUGAUCUAACCAUGUGGUGGAACGAUGGAAACGGAACAUGGUUCUGUCAAGCACCGCGGAAAGCAUCGCUCUCUCCUGCAGCAUGGCC
Get precursor sequence
Structure
        10          20        30        40        50        60 
GACUCUGACCAGUUGCC--|  GG       UUU         CU        GGUGGAACG 
                   GCG  GCUUUCC   GUGCUUGAU  AACCAUGU         A
                   CGC  CGAAAGG   CACGAACUG  UUGGUACA         U
CCGGUACGACGUCCUCUCU^  UA       CGC         UC        AGGCAAAGG 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-218-P4_5p
mirBase accessionMIMAT0000888
Sequence 
0- UUGUGCUUGAUCUAACCAUGU -21
Get sequence
Proposed targets microrna.org: MIMAT0000888
TargetScanVert: rno-miR-218a-5p
miRDB: MIMAT0000888
Star sequence

Rno-Mir-218-P4_3p*
mirBase accessionMIMAT0004740
Sequence 
43- AUGGUUCUGUCAAGCACCGCG -64
Get sequence
Proposed targets microrna.org: MIMAT0004740
TargetScanVert: rno-miR-218a-2-3p
miRDB: MIMAT0004740