Mir-218-P4

MirGeneDB ID

Oan-Mir-218-P4

Family name

MIR-218 (all species)

Seed

UGUGCUU

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-218-2

Paralogues

Oan-Mir-218-P2

Orthologues

Aca-Mir-218-P4 Ami-Mir-218-P4 Bta-Mir-218-P4 Cfa-Mir-218-P4 Cja-Mir-218-P4 Cli-Mir-218-P4 Cmi-Mir-218-P4 Cpi-Mir-218-P4 Cpo-Mir-218-P4 Dno-Mir-218-P4 Dre-Mir-218-P4-v1 Dre-Mir-218-P4-v2 Eca-Mir-218-P4 Ete-Mir-218-P4 Gga-Mir-218-P4 Gja-Mir-218-P4 Gmo-Mir-218-P4 Hsa-Mir-218-P4 Laf-Mir-218-P4 Lch-Mir-218-P4 Loc-Mir-218-P4 Mal-Mir-218-P4 Mdo-Mir-218-P4 Mml-Mir-218-P4 Mmr-Mir-218-P4 Mmu-Mir-218-P4 Ocu-Mir-218-P4 Pab-Mir-218-P4 Pbv-Mir-218-P4 Rno-Mir-218-P4 Sha-Mir-218-P4 Spt-Mir-218-P4 Sto-Mir-218-P4 Tgu-Mir-218-P4 Tni-Mir-218-P4 Xla-Mir-218-P4a Xla-Mir-218-P4b Xtr-Mir-218-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041749.1: 21569479-21569542 [+]

Precursor
(pre-Mir +30nt flank)

ACUGACUCUGACUGGCCAUGGGGCUUUCCUUUGUGCUUGAUCUAACCAUGUGGUGGAACAAUAUAAACAGAACAUGGUUCUGUCAAGCACCACGGAAGGCUCCGUGUUUUCCUGCAGCAUGGCC

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Structure

        10          20        30        40        50        60 
ACUGACUCUGACUGGCC--|           UUU         CU        GGUGGAACA 
                   AUGGGGCUUUCC   GUGCUUGAU  AACCAUGU         A
                   UGCCUCGGAAGG   CACGAACUG  UUGGUACA         U
CCGGUACGACGUCCUUUUG^           CAC         UC        AGACAAAUA 
  120       110       100        90        80        70

Deep sequencing

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Comment

The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Oan-Mir-218-P4_5p

mirBase accession

MIMAT0006815

Sequence

0- UUGUGCUUGAUCUAACCAUGUG -22

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Co-mature sequence

Oan-Mir-218-P4_3p

mirBase accession

None

Sequence

42- CAUGGUUCUGUCAAGCACCACG -64

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