MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-218-P4

Family name MIR-218 (all species)
Seed UGUGCUU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-218-2
Paralogues Xtr-Mir-218-P2 
Orthologues Aca-Mir-218-P4  Ami-Mir-218-P4  Bta-Mir-218-P4  Cfa-Mir-218-P4  Cja-Mir-218-P4  Cli-Mir-218-P4  Cmi-Mir-218-P4  Cpi-Mir-218-P4  Cpo-Mir-218-P4  Dno-Mir-218-P4  Dre-Mir-218-P4-v1  Dre-Mir-218-P4-v2  Eca-Mir-218-P4  Ete-Mir-218-P4  Gga-Mir-218-P4  Gja-Mir-218-P4  Gmo-Mir-218-P4  Hsa-Mir-218-P4  Laf-Mir-218-P4  Lch-Mir-218-P4  Loc-Mir-218-P4  Mal-Mir-218-P4  Mdo-Mir-218-P4  Mml-Mir-218-P4  Mmr-Mir-218-P4  Mmu-Mir-218-P4  Oan-Mir-218-P4  Ocu-Mir-218-P4  Pab-Mir-218-P4  Pbv-Mir-218-P4  Rno-Mir-218-P4  Sha-Mir-218-P4  Spt-Mir-218-P4  Sto-Mir-218-P4  Tgu-Mir-218-P4  Tni-Mir-218-P4  Xla-Mir-218-P4a  Xla-Mir-218-P4b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr3: 24052824-24052887 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUGGCUAUGACUCUUAAUGGGGUUUUCCUUUGUGCUUGAUCUAACCAUGUGGUAGAACAAUACAUAUUGAACAUGGUUCUGUCAAGCACCAUGGAAGGCCACAUACUUUUCUGCCGCAUGGCA
Get precursor sequence
Structure
        10          20        30        40        50        60 
ACUGGCUAUGACUCUUA--|  G        UUU         CU        GGUAGAACA 
                   AUG GGUUUUCC   GUGCUUGAU  AACCAUGU         A
                   UAC CCGGAAGG   CACGAACUG  UUGGUACA         U
ACGGUACGCCGUCUUUUCA^  A        UAC         UC        AGUUAUACA 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-218-P4_5p

mirBase accessionMIMAT0003631
Sequence
0- UUGUGCUUGAUCUAACCAUGUG -22
Get sequence
Proposed targets TargetScanVert: xtr-miR-218
Star sequence

Xtr-Mir-218-P4_3p* (predicted)

mirBase accessionNone
Sequence
43- AUGGUUCUGUCAAGCACCAUG -64
Get sequence