Mir-218-P4

MirGeneDB ID

Laf-Mir-218-P4

Family name

MIR-218 (all species)

Seed

UGUGCUU

Species

African bush elephant (Loxodonta africana)

MiRBase ID

Paralogues

Laf-Mir-218-P2

Orthologues

Aca-Mir-218-P4 Ami-Mir-218-P4 Bta-Mir-218-P4 Cfa-Mir-218-P4 Cja-Mir-218-P4 Cli-Mir-218-P4 Cmi-Mir-218-P4 Cpi-Mir-218-P4 Cpo-Mir-218-P4 Dno-Mir-218-P4 Dre-Mir-218-P4-v1 Dre-Mir-218-P4-v2 Eca-Mir-218-P4 Ete-Mir-218-P4 Gga-Mir-218-P4 Gja-Mir-218-P4 Gmo-Mir-218-P4 Hsa-Mir-218-P4 Lch-Mir-218-P4 Loc-Mir-218-P4 Mal-Mir-218-P4 Mdo-Mir-218-P4 Mml-Mir-218-P4 Mmr-Mir-218-P4 Mmu-Mir-218-P4 Oan-Mir-218-P4 Ocu-Mir-218-P4 Pab-Mir-218-P4 Pbv-Mir-218-P4 Rno-Mir-218-P4 Sha-Mir-218-P4 Spt-Mir-218-P4 Sto-Mir-218-P4 Tgu-Mir-218-P4 Tni-Mir-218-P4 Xla-Mir-218-P4a Xla-Mir-218-P4b Xtr-Mir-218-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000001905.1_Loxafr3.0)

GL010028.1: 91358571-91358634 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GACUCUGACCAGUCGCCGCGAGGCUUUCCUUUGUGCUUGAUCUAACCAUGUGGUGGAACGAUGGAAACGGAACAUGGUUCUGUCAAGCACCGCGGAAAGCACCGUGCUCUCCUGCAGCAUGGCC

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Structure

        10          20        30        40        50        60 
GACUCUGACCAGUCGCC--|  AG       UUU         CU        GGUGGAACG 
                   GCG  GCUUUCC   GUGCUUGAU  AACCAUGU         A
                   UGC  CGAAAGG   CACGAACUG  UUGGUACA         U
CCGGUACGACGUCCUCUCG^  CA       CGC         UC        AGGCAAAGG 
  120       110       100        90        80        70

Deep sequencing

Comment

There is a second Dicer cut +1 on both arms.

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Wh

Mature sequence

Laf-Mir-218-P4_5p (predicted)

mirBase accession

None

Sequence

0- UUGUGCUUGAUCUAACCAUGU -21

Get sequence

Star sequence

Laf-Mir-218-P4_3p* (predicted)

mirBase accession

None

Sequence

43- AUGGUUCUGUCAAGCACCGCG -64

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