| MirGeneDB ID | Cja-Mir-218-P4 |
|---|---|
| Family name | MIR-218 (all species) |
| Seed | UGUGCUU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-218-P2 |
| Orthologues | Aca-Mir-218-P4 Ami-Mir-218-P4 Bta-Mir-218-P4 Cfa-Mir-218-P4 Cli-Mir-218-P4 Cmi-Mir-218-P4 Cpi-Mir-218-P4 Cpo-Mir-218-P4 Dno-Mir-218-P4 Dre-Mir-218-P4-v1 Dre-Mir-218-P4-v2 Eca-Mir-218-P4 Ete-Mir-218-P4 Gga-Mir-218-P4 Gja-Mir-218-P4 Gmo-Mir-218-P4 Hsa-Mir-218-P4 Laf-Mir-218-P4 Lch-Mir-218-P4 Loc-Mir-218-P4 Mal-Mir-218-P4 Mdo-Mir-218-P4 Mml-Mir-218-P4 Mmr-Mir-218-P4 Mmu-Mir-218-P4 Oan-Mir-218-P4 Ocu-Mir-218-P4 Pab-Mir-218-P4 Pbv-Mir-218-P4 Rno-Mir-218-P4 Sha-Mir-218-P4 Spt-Mir-218-P4 Sto-Mir-218-P4 Tgu-Mir-218-P4 Tni-Mir-218-P4 Xla-Mir-218-P4a Xla-Mir-218-P4b Xtr-Mir-218-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021916.1: 29703071-29703134 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GACUCUGACCAGUCGCUGCGGGGCUUUCCUUUGUGCUUGAUCUAACCAUGUGGUGGAAUGAUGGAAACGGAACAUGGUUCUGUCAAGCACCGCGGAAAGCACCGUGCUCUCCUGCAGCAUGGCCGet precursor sequence |
| Structure | 10 20 30 40 50 60 GACUCUGACCAGUCGCU--| G UUU CU GGUGGAAUG GCGG GCUUUCC GUGCUUGAU AACCAUGU A UGCC CGAAAGG CACGAACUG UUGGUACA U CCGGUACGACGUCCUCUCG^ A CGC UC AGGCAAAGG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-218-P4_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUGUGCUUGAUCUAACCAUGU -21
Get sequence
|
| Star sequence | Cja-Mir-218-P4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
43- AUGGUUCUGUCAAGCACCGCG -64
Get sequence
|
