MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-218-P4

Family name MIR-218 (all species)
Seed UGUGCUU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-218-P2 
Orthologues Aca-Mir-218-P4  Ami-Mir-218-P4  Bta-Mir-218-P4  Cfa-Mir-218-P4  Cli-Mir-218-P4  Cmi-Mir-218-P4  Cpi-Mir-218-P4  Cpo-Mir-218-P4  Dno-Mir-218-P4  Dre-Mir-218-P4-v1  Dre-Mir-218-P4-v2  Eca-Mir-218-P4  Ete-Mir-218-P4  Gga-Mir-218-P4  Gja-Mir-218-P4  Gmo-Mir-218-P4  Hsa-Mir-218-P4  Laf-Mir-218-P4  Lch-Mir-218-P4  Loc-Mir-218-P4  Mal-Mir-218-P4  Mdo-Mir-218-P4  Mml-Mir-218-P4  Mmr-Mir-218-P4  Mmu-Mir-218-P4  Oan-Mir-218-P4  Ocu-Mir-218-P4  Pab-Mir-218-P4  Pbv-Mir-218-P4  Rno-Mir-218-P4  Sha-Mir-218-P4  Spt-Mir-218-P4  Sto-Mir-218-P4  Tgu-Mir-218-P4  Tni-Mir-218-P4  Xla-Mir-218-P4a  Xla-Mir-218-P4b  Xtr-Mir-218-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021916.1: 29703071-29703134 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACUCUGACCAGUCGCUGCGGGGCUUUCCUUUGUGCUUGAUCUAACCAUGUGGUGGAAUGAUGGAAACGGAACAUGGUUCUGUCAAGCACCGCGGAAAGCACCGUGCUCUCCUGCAGCAUGGCC
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Structure
        10          20        30        40        50        60 
GACUCUGACCAGUCGCU--|   G       UUU         CU        GGUGGAAUG 
                   GCGG GCUUUCC   GUGCUUGAU  AACCAUGU         A
                   UGCC CGAAAGG   CACGAACUG  UUGGUACA         U
CCGGUACGACGUCCUCUCG^   A       CGC         UC        AGGCAAAGG 
  120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-218-P4_5p (predicted)
mirBase accessionNone
Sequence 
0- UUGUGCUUGAUCUAACCAUGU -21
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Star sequence

Cja-Mir-218-P4_3p* (predicted)
mirBase accessionNone
Sequence 
43- AUGGUUCUGUCAAGCACCGCG -64
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