MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-218-P4-v1

Family name MIR-218 (all species)
Seed UGUGCUU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-218a-1
Paralogues Dre-Mir-218-P2  Dre-Mir-218-P3  Dre-Mir-218-P4-v2 
Orthologues Aca-Mir-218-P4  Ami-Mir-218-P4  Bta-Mir-218-P4  Cfa-Mir-218-P4  Cja-Mir-218-P4  Cli-Mir-218-P4  Cmi-Mir-218-P4  Cpi-Mir-218-P4  Cpo-Mir-218-P4  Dno-Mir-218-P4  Eca-Mir-218-P4  Ete-Mir-218-P4  Gga-Mir-218-P4  Gja-Mir-218-P4  Gmo-Mir-218-P4  Hsa-Mir-218-P4  Laf-Mir-218-P4  Lch-Mir-218-P4  Loc-Mir-218-P4  Mal-Mir-218-P4  Mdo-Mir-218-P4  Mml-Mir-218-P4  Mmr-Mir-218-P4  Mmu-Mir-218-P4  Oan-Mir-218-P4  Ocu-Mir-218-P4  Pab-Mir-218-P4  Pbv-Mir-218-P4  Rno-Mir-218-P4  Sha-Mir-218-P4  Spt-Mir-218-P4  Sto-Mir-218-P4  Tgu-Mir-218-P4  Tni-Mir-218-P4  Xla-Mir-218-P4a  Xla-Mir-218-P4b  Xtr-Mir-218-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr14: 24562809-24562873 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-218-P4-v1)		 Mir-218-P4-v1 chr14: 24562809-24562873 [-] UCSC Ensembl
Mir-218-P4-v2 chr14: 24562812-24562870 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCCACUCUGGCCUAUGGUGCAGCUGUCUCUUGUGCUUGAUCUAACCAUGUGCCGCCGCCUACACAAGCCUCACAUGGUUCCGUCAAGCACCAGGGACCGCUGGGCACACUCGCACACAGCAUGG
Get precursor sequence
Structure
        10          20        30        40        50        60  
CUCCACUCUGGCCUAUG--| G    U      U         CU         CCGCCGCCU 
                   GU CAGC GUCUCU GUGCUUGAU  AACCAUGUG         \
                   CG GUCG CAGGGA CACGAACUG  UUGGUACAC         A
GGUACGACACACGCUCACA^ G    C      C         CC         UCCGAACAC 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-218-P4-v1_5p
mirBase accessionMIMAT0001868
Sequence 
0- UUGUGCUUGAUCUAACCAUGUG -22
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Proposed targets TargetScanFish: dre-miR-218a
Star sequence

Dre-Mir-218-P4-v1_3p*
mirBase accessionNone
Sequence 
43- CAUGGUUCCGUCAAGCACCAGG -65
Get sequence