MirGeneDB ID | Cli-Mir-218-P4 |
Family name |
MIR-218 (all species) |
Seed |
UGUGCUU |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
cli-mir-218-2
|
Paralogues |
Cli-Mir-218-P2
|
Orthologues |
Aca-Mir-218-P4
Ami-Mir-218-P4
Bta-Mir-218-P4
Cfa-Mir-218-P4
Cja-Mir-218-P4
Cmi-Mir-218-P4
Cpi-Mir-218-P4
Cpo-Mir-218-P4
Dno-Mir-218-P4
Dre-Mir-218-P4-v1
Dre-Mir-218-P4-v2
Eca-Mir-218-P4
Ete-Mir-218-P4
Gga-Mir-218-P4
Gja-Mir-218-P4
Gmo-Mir-218-P4
Hsa-Mir-218-P4
Laf-Mir-218-P4
Lch-Mir-218-P4
Loc-Mir-218-P4
Mal-Mir-218-P4
Mdo-Mir-218-P4
Mml-Mir-218-P4
Mmr-Mir-218-P4
Mmu-Mir-218-P4
Oan-Mir-218-P4
Ocu-Mir-218-P4
Pab-Mir-218-P4
Pbv-Mir-218-P4
Rno-Mir-218-P4
Sha-Mir-218-P4
Spt-Mir-218-P4
Sto-Mir-218-P4
Tgu-Mir-218-P4
Tni-Mir-218-P4
Xla-Mir-218-P4a
Xla-Mir-218-P4b
Xtr-Mir-218-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (colLiv2) |
scaffold79: 13392693-13392756 [+]
|
Precursor (pre-Mir +30nt flank) |
UCUGACUCUGGCUGUUUGUGGGGUUUUCCUUUGUGCUUGAUCUAACCAUGUGGUAGAACAAUACAAAUGGAACAUGGUUCUGUCAAGCACCAUGGAAGGCUGCAUACUCCCUGCCGCAUGGCAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCUGACUCUGGCUGUUU--| G UUU CU GGUAGAACA
GUG GGUUUUCC GUGCUUGAU AACCAUGU A
UAC UCGGAAGG CACGAACUG UUGGUACA U
UACGGUACGCCGUCCCUCA^ G UAC UC AGGUAAACA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cli-Mir-218-P4_5p |
mirBase accession | MIMAT0038602 |
Sequence |
0- UUGUGCUUGAUCUAACCAUGU -21
Get sequence
|
Star sequence |
Cli-Mir-218-P4_3p* |
mirBase accession | MIMAT0038603 |
Sequence |
43- AUGGUUCUGUCAAGCACCAUG -64
Get sequence
|