MirGeneDB ID | Cli-Mir-218-P2 |
Family name |
MIR-218 (all species) |
Seed |
UGUGCUU |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
cli-mir-218-1
|
Paralogues |
Cli-Mir-218-P4
|
Orthologues |
Aca-Mir-218-P2
Ami-Mir-218-P2
Bta-Mir-218-P2
Cfa-Mir-218-P2
Cja-Mir-218-P2
Cmi-Mir-218-P2
Cpi-Mir-218-P2
Cpo-Mir-218-P2
Dno-Mir-218-P2
Dre-Mir-218-P2
Eca-Mir-218-P2
Ete-Mir-218-P2
Gga-Mir-218-P2
Gja-Mir-218-P2
Gmo-Mir-218-P2
Hsa-Mir-218-P2
Laf-Mir-218-P2
Lch-Mir-218-P2
Loc-Mir-218-P2
Mal-Mir-218-P2
Mdo-Mir-218-P2
Mml-Mir-218-P2
Mmr-Mir-218-P2
Mmu-Mir-218-P2
Mun-Mir-218-P2
Neu-Mir-218-P2
Oan-Mir-218-P2
Ocu-Mir-218-P2
Pab-Mir-218-P2
Pbv-Mir-218-P2
Pma-Mir-218-o2
Rno-Mir-218-P2
Sha-Mir-218-P2
Spt-Mir-218-P2
Sto-Mir-218-P2
Tgu-Mir-218-P2
Tni-Mir-218-P2
Xla-Mir-218-P2a
Xla-Mir-218-P2b
Xtr-Mir-218-P2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (colLiv2) |
scaffold38: 14206876-14206939 [-]
|
Precursor (pre-Mir +30nt flank) |
UGGGUUUUGAUAAUGUAGCGAGAUUUUCUGUUGUGCUUGAUCUAACCAUGUGGUUGUGAGGUAUGAGUAAAACAUGGUUCUGUCAAGCACCAUGGAACGUCACGCAGCUUUCUACAGCAUGGCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGGGUUUUGAUAAUGUA--| A U U CU GGUUGUGAG
GCG GAU UUCUGU GUGCUUGAU AACCAUGU G
CGC CUG AAGGUA CACGAACUG UUGGUACA U
ACGGUACGACAUCUUUCGA^ A C C UC AAAUGAGUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There are Dicer cuts ranging from +1 to +4 on both arms but this represents the highest mature form across most vertebrates. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cli-Mir-218-P2_5p |
mirBase accession | MIMAT0038602 |
Sequence |
0- UUGUGCUUGAUCUAACCAUGU -21
Get sequence
|
Star sequence |
Cli-Mir-218-P2_3p* |
mirBase accession | MIMAT0038603 |
Sequence |
43- AUGGUUCUGUCAAGCACCAUG -64
Get sequence
|