Mir-218-P2

MirGeneDB ID

Mal-Mir-218-P2

Family name

MIR-218 (all species)

Seed

UGUGCUU

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-218-P3 Mal-Mir-218-P4

Orthologues

Aca-Mir-218-P2 Ami-Mir-218-P2 Bta-Mir-218-P2 Cfa-Mir-218-P2 Cja-Mir-218-P2 Cli-Mir-218-P2 Cmi-Mir-218-P2 Cpi-Mir-218-P2 Cpo-Mir-218-P2 Dno-Mir-218-P2 Dre-Mir-218-P2 Eca-Mir-218-P2 Ete-Mir-218-P2 Gga-Mir-218-P2 Gja-Mir-218-P2 Gmo-Mir-218-P2 Hsa-Mir-218-P2 Laf-Mir-218-P2 Lch-Mir-218-P2 Loc-Mir-218-P2 Mdo-Mir-218-P2 Mml-Mir-218-P2 Mmr-Mir-218-P2 Mmu-Mir-218-P2 Mun-Mir-218-P2 Neu-Mir-218-P2 Oan-Mir-218-P2 Ocu-Mir-218-P2 Pab-Mir-218-P2 Pbv-Mir-218-P2 Pma-Mir-218-o2 Rno-Mir-218-P2 Sha-Mir-218-P2 Spt-Mir-218-P2 Sto-Mir-218-P2 Tgu-Mir-218-P2 Tni-Mir-218-P2 Xla-Mir-218-P2a Xla-Mir-218-P2b Xtr-Mir-218-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884742.1: 2625305-2625371 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAGGAGCAGUCAGUCAGCAGGUUGUUCCUUUGUGCUUGAUCUAACCAUGUGGCUGCCAGGUUCCUAUAGUGGAACAUGGUUCUGUCAAGCACCAUGGAACGGCCAUGCAAAACCCUACAGCAAUCU

Get precursor sequence

Structure

        10         20         30        40        50        60   
GGAGGAGCAGUCAGUCA-   -|        UUU         CU        GGCUGCCAGGU 
                  GCA GGUUGUUCC   GUGCUUGAU  AACCAUGU           \
                  CGU CCGGCAAGG   CACGAACUG  UUGGUACA           U
UCUAACGACAUCCCAAAA   A^        UAC         UC        AGGUGAUAUCC 
     120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-218-P2_5p

mirBase accession

None

Sequence

0- UUGUGCUUGAUCUAACCAUGUG -22

Get sequence

Star sequence

Mal-Mir-218-P2_3p* (predicted)

mirBase accession

None

Sequence

45- CAUGGUUCUGUCAAGCACCAUG -67

Get sequence