MirGeneDB ID | Lch-Mir-218-P2 |
---|---|
Family name | MIR-218 (all species) |
Seed | UGUGCUU |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-218-P3 Lch-Mir-218-P4 |
Orthologues | Aca-Mir-218-P2 Ami-Mir-218-P2 Bta-Mir-218-P2 Cfa-Mir-218-P2 Cja-Mir-218-P2 Cli-Mir-218-P2 Cmi-Mir-218-P2 Cpi-Mir-218-P2 Cpo-Mir-218-P2 Dno-Mir-218-P2 Dre-Mir-218-P2 Eca-Mir-218-P2 Ete-Mir-218-P2 Gga-Mir-218-P2 Gja-Mir-218-P2 Gmo-Mir-218-P2 Hsa-Mir-218-P2 Laf-Mir-218-P2 Loc-Mir-218-P2 Mal-Mir-218-P2 Mdo-Mir-218-P2 Mml-Mir-218-P2 Mmr-Mir-218-P2 Mmu-Mir-218-P2 Mun-Mir-218-P2 Neu-Mir-218-P2 Oan-Mir-218-P2 Ocu-Mir-218-P2 Pab-Mir-218-P2 Pbv-Mir-218-P2 Pma-Mir-218-o2 Rno-Mir-218-P2 Sha-Mir-218-P2 Spt-Mir-218-P2 Sto-Mir-218-P2 Tgu-Mir-218-P2 Tni-Mir-218-P2 Xla-Mir-218-P2a Xla-Mir-218-P2b Xtr-Mir-218-P2 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH127602.1: 624123-624186 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | ACAGUUUUGAUAACUUAGCGGGAUUUUCCUUUGUGCUUGAUCUAACCAUGUGGUUGCGAGGUAUGAGUAAAACAUGGUUCUGUCAAGCACCAUGGAACGUCACGCAGCUUUCUACAGCAUGGCAGet precursor sequence |
Structure | 10 20 30 40 50 60 ACAGUUUUGAUAACUUA--| G U UUU CU GGUUGCGAG GCG GAU UUCC GUGCUUGAU AACCAUGU G CGC CUG AAGG CACGAACUG UUGGUACA U ACGGUACGACAUCUUUCGA^ A C UAC UC AAAUGAGUA 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Lch-Mir-218-P2_5p (predicted) |
mirBase accession | None |
Sequence |
0- UUGUGCUUGAUCUAACCAUGUG -22
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|
Star sequence | Lch-Mir-218-P2_3p* (predicted) |
mirBase accession | None |
Sequence |
42- CAUGGUUCUGUCAAGCACCAUG -64
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|