MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-218-P2

Family name MIR-218 (all species)
Seed UGUGCUU
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-218-1
Paralogues Mdo-Mir-218-P4 
Orthologues Aca-Mir-218-P2  Ami-Mir-218-P2  Bta-Mir-218-P2  Cfa-Mir-218-P2  Cli-Mir-218-P2  Cmi-Mir-218-P2  Cpi-Mir-218-P2  Cpo-Mir-218-P2  Dno-Mir-218-P2  Dre-Mir-218-P2  Ete-Mir-218-P2  Gga-Mir-218-P2  Gja-Mir-218-P2  Gmo-Mir-218-P2  Hsa-Mir-218-P2  Lch-Mir-218-P2  Loc-Mir-218-P2  Mal-Mir-218-P2  Mml-Mir-218-P2  Mmu-Mir-218-P2  Mun-Mir-218-P2  Oan-Mir-218-P2  Ocu-Mir-218-P2  Pbv-Mir-218-P2  Pma-Mir-218-o2  Rno-Mir-218-P2  Sha-Mir-218-P2  Spt-Mir-218-P2  Sto-Mir-218-P2  Tgu-Mir-218-P2  Tni-Mir-218-P2  Xla-Mir-218-P2a  Xla-Mir-218-P2b  Xtr-Mir-218-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
5: 208287249-208287312 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCGUAAUGAUUAUGUGGCGAGAUUUUCUGUUGUGCUUGAUCUAACCAUGUGGUUGUGAGGUAUGAGUAAAACAUGGUUCUGUCAAGCACCAUGGAACGUCACGCAGCUUUCUACAGCAUGACA
Get precursor sequence
Structure
        10          20        30        40        50        60 
GCCGUAAUGAUUAUGUG--|  A   U      U         CU        GGUUGUGAG 
                   GCG GAU UUCUGU GUGCUUGAU  AACCAUGU         G
                   CGC CUG AAGGUA CACGAACUG  UUGGUACA         U
ACAGUACGACAUCUUUCGA^  A   C      C         UC        AAAUGAGUA 
  120       110       100        90        80        70
Deep sequencing
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CommentThere are Dicer cuts ranging from +1 to +4 on both arms but this represents the highest mature form across most vertebrates.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-218-P2_5p

mirBase accessionMIMAT0004133
Sequence
0- UUGUGCUUGAUCUAACCAUGU -21
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Proposed targets TargetScanVert: mdo-miR-218-5p
Star sequence

Mdo-Mir-218-P2_3p*

mirBase accessionMIMAT0026680
Sequence
43- AUGGUUCUGUCAAGCACCAUG -64
Get sequence
Proposed targets TargetScanVert: mdo-miR-218-1-3p