MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-218-P2

Family name MIR-218 (all species)
Seed UGUGCUU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-218a-2
Paralogues Dre-Mir-218-P3  Dre-Mir-218-P4-v1  Dre-Mir-218-P4-v2 
Orthologues Aca-Mir-218-P2  Ami-Mir-218-P2  Bta-Mir-218-P2  Cfa-Mir-218-P2  Cja-Mir-218-P2  Cli-Mir-218-P2  Cmi-Mir-218-P2  Cpi-Mir-218-P2  Cpo-Mir-218-P2  Dno-Mir-218-P2  Eca-Mir-218-P2  Ete-Mir-218-P2  Gga-Mir-218-P2  Gja-Mir-218-P2  Gmo-Mir-218-P2  Hsa-Mir-218-P2  Laf-Mir-218-P2  Lch-Mir-218-P2  Loc-Mir-218-P2  Mal-Mir-218-P2  Mdo-Mir-218-P2  Mml-Mir-218-P2  Mmr-Mir-218-P2  Mmu-Mir-218-P2  Mun-Mir-218-P2  Neu-Mir-218-P2  Oan-Mir-218-P2  Ocu-Mir-218-P2  Pab-Mir-218-P2  Pbv-Mir-218-P2  Pma-Mir-218-o2  Rno-Mir-218-P2  Sha-Mir-218-P2  Spt-Mir-218-P2  Sto-Mir-218-P2  Tgu-Mir-218-P2  Tni-Mir-218-P2  Xla-Mir-218-P2a  Xla-Mir-218-P2b  Xtr-Mir-218-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr1: 23866891-23866954 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGUGGAGGAAAUUCAGCGGGGUUUUCCUUUGUGCUUGAUCUAACCAUGUGGUUGCAGACUCAGACUAAUACAUGGUUCUGUCAAGCACCAUGGAAGGUCUUGCAGCAUCUACAGCAUGGCAA
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Structure
        10          20        30        40        50        60 
CUUGUGGAGGAAAUUCA--|    GU     UUU         CU         GUUGCAGA 
                   GCGGG  UUUCC   GUGCUUGAU  AACCAUGUG        C
                   CGUUC  GAAGG   CACGAACUG  UUGGUACAU        U
AACGGUACGACAUCUACGA^    UG     UAC         UC         AAUCAGAC 
  120       110       100        90        80        70
Deep sequencing
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CommentThere are Dicer cuts ranging from -1 to +4.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-218-P2_5p
mirBase accessionMIMAT0001868
Sequence 
0- UUGUGCUUGAUCUAACCAUGUG -22
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Proposed targets TargetScanFish: dre-miR-218a
Star sequence

Dre-Mir-218-P2_3p*
mirBase accessionNone
Sequence 
42- CAUGGUUCUGUCAAGCACCAUG -64
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