Mir-218-P2b

MirGeneDB ID

Xla-Mir-218-P2b

Family name

MIR-218 (all species)

Seed

UGUGCUU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-218-P2a Xla-Mir-218-P4a Xla-Mir-218-P4b

Orthologues

Aca-Mir-218-P2 Ami-Mir-218-P2 Bta-Mir-218-P2 Cfa-Mir-218-P2 Cja-Mir-218-P2 Cli-Mir-218-P2 Cmi-Mir-218-P2 Cpi-Mir-218-P2 Cpo-Mir-218-P2 Dno-Mir-218-P2 Dre-Mir-218-P2 Eca-Mir-218-P2 Ete-Mir-218-P2 Gga-Mir-218-P2 Gja-Mir-218-P2 Gmo-Mir-218-P2 Hsa-Mir-218-P2 Laf-Mir-218-P2 Lch-Mir-218-P2 Loc-Mir-218-P2 Mal-Mir-218-P2 Mdo-Mir-218-P2 Mml-Mir-218-P2 Mmr-Mir-218-P2 Mmu-Mir-218-P2 Mun-Mir-218-P2 Neu-Mir-218-P2 Oan-Mir-218-P2 Ocu-Mir-218-P2 Pab-Mir-218-P2 Pbv-Mir-218-P2 Pma-Mir-218-o2 Rno-Mir-218-P2 Sha-Mir-218-P2 Spt-Mir-218-P2 Sto-Mir-218-P2 Tgu-Mir-218-P2 Tni-Mir-218-P2 Xtr-Mir-218-P2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030725.1: 19793163-19793226 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCACUUUUGGUAACAAGGCGAGAUUUUCUGUUGUGCUUGAUCUAACCAUGUGGUUGUGAGGUAUGAGUAAAACAUGGUUCUGUCAAGCACCAUGGAACGUCACGCAGCUUUCUACAGCAUGGCA

Get precursor sequence

Structure

        10          20        30        40        50        60 
GCACUUUUGGUAACAAG--|  A   U      U         CU        GGUUGUGAG 
                   GCG GAU UUCUGU GUGCUUGAU  AACCAUGU         G
                   CGC CUG AAGGUA CACGAACUG  UUGGUACA         U
ACGGUACGACAUCUUUCGA^  A   C      C         UC        AAAUGAGUA 
  120       110       100        90        80        70

Deep sequencing

Comment

There is a Dicer cut +3 on the 3p arm but without a corresponding 5p read.

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Mir-218-P2b_5p

mirBase accession

None

Sequence

0- UUGUGCUUGAUCUAACCAUGUG -22

Get sequence

Star sequence

Xla-Mir-218-P2b_3p* (predicted)

mirBase accession

None

Sequence

42- CAUGGUUCUGUCAAGCACCAUG -64

Get sequence