Mir-218-P4a

MirGeneDB ID

Xla-Mir-218-P4a

Family name

MIR-218 (all species)

Seed

UGUGCUU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-218-P2a Xla-Mir-218-P2b Xla-Mir-218-P4b

Orthologues

Aca-Mir-218-P4 Ami-Mir-218-P4 Bta-Mir-218-P4 Cfa-Mir-218-P4 Cja-Mir-218-P4 Cli-Mir-218-P4 Cmi-Mir-218-P4 Cpi-Mir-218-P4 Cpo-Mir-218-P4 Dno-Mir-218-P4 Dre-Mir-218-P4-v1 Dre-Mir-218-P4-v2 Eca-Mir-218-P4 Ete-Mir-218-P4 Gga-Mir-218-P4 Gja-Mir-218-P4 Gmo-Mir-218-P4 Hsa-Mir-218-P4 Laf-Mir-218-P4 Lch-Mir-218-P4 Loc-Mir-218-P4 Mal-Mir-218-P4 Mdo-Mir-218-P4 Mml-Mir-218-P4 Mmr-Mir-218-P4 Mmu-Mir-218-P4 Oan-Mir-218-P4 Ocu-Mir-218-P4 Pab-Mir-218-P4 Pbv-Mir-218-P4 Rno-Mir-218-P4 Sha-Mir-218-P4 Spt-Mir-218-P4 Sto-Mir-218-P4 Tgu-Mir-218-P4 Tni-Mir-218-P4 Xtr-Mir-218-P4

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030728.1: 26374994-26375057 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACUGGCUAUGACUCUUAAUGGGGUUUUCCUUUGUGCUUGAUCUAACCAUGUGGUAGAACAAUACAUAUUGAACAUGGUUCUGUCAAGCACCAUGGAAGGCCACAUACUUUUCUGCCGCAUGGCA

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Structure

        10          20        30        40        50        60 
ACUGGCUAUGACUCUUA--|  G        UUU         CU        GGUAGAACA 
                   AUG GGUUUUCC   GUGCUUGAU  AACCAUGU         A
                   UAC CCGGAAGG   CACGAACUG  UUGGUACA         U
ACGGUACGCCGUCUUUUCA^  A        UAC         UC        AGUUAUACA 
  120       110       100        90        80        70

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Mir-218-P4a_5p

mirBase accession

None

Sequence

0- UUGUGCUUGAUCUAACCAUGUG -22

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Star sequence

Xla-Mir-218-P4a_3p* (predicted)

mirBase accession

None

Sequence

43- AUGGUUCUGUCAAGCACCAUG -64

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