MirGeneDB 3.0

MirGeneDB ID

Mmu-Mir-218-P4

Family name MIR-218 (all species)
Seed UGUGCUU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-218-2
Paralogues Mmu-Mir-218-P2 
Orthologues Aca-Mir-218-P4  Ami-Mir-218-P4  Bta-Mir-218-P4  Cfa-Mir-218-P4  Cja-Mir-218-P4  Cli-Mir-218-P4  Cmi-Mir-218-P4  Cpi-Mir-218-P4  Cpo-Mir-218-P4  Dno-Mir-218-P4  Dre-Mir-218-P4-v1  Dre-Mir-218-P4-v2  Eca-Mir-218-P4  Ete-Mir-218-P4  Gga-Mir-218-P4  Gja-Mir-218-P4  Gmo-Mir-218-P4  Hsa-Mir-218-P4  Laf-Mir-218-P4  Lch-Mir-218-P4  Loc-Mir-218-P4  Mal-Mir-218-P4  Mdo-Mir-218-P4  Mml-Mir-218-P4  Mmr-Mir-218-P4  Oan-Mir-218-P4  Ocu-Mir-218-P4  Pab-Mir-218-P4  Pbv-Mir-218-P4  Rno-Mir-218-P4  Sha-Mir-218-P4  Spt-Mir-218-P4  Sto-Mir-218-P4  Tgu-Mir-218-P4  Tni-Mir-218-P4  Xla-Mir-218-P4a  Xla-Mir-218-P4b  Xtr-Mir-218-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mm10)
chr11: 35616840-35616903 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACUCUGACCAGUUGCCGCGGGGCUUUCCUUUGUGCUUGAUCUAACCAUGUGGUGGAACGAUGGAAACGGAACAUGGUUCUGUCAAGCACCGCGGAAAGCAUCGCUCUCUCCUGCAGCAUGGCC
Get precursor sequence
Structure
        10          20        30        40        50        60 
GACUCUGACCAGUUGCC--|  GG       UUU         CU        GGUGGAACG 
                   GCG  GCUUUCC   GUGCUUGAU  AACCAUGU         A
                   CGC  CGAAAGG   CACGAACUG  UUGGUACA         U
CCGGUACGACGUCCUCUCU^  UA       CGC         UC        AGGCAAAGG 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-218-P4_5p

mirBase accessionMIMAT0000663
Sequence
0- UUGUGCUUGAUCUAACCAUGU -21
Get sequence
Proposed targets microrna.org: MIMAT0000663
TargetScanVert: mmu-miR-218-5p
miRDB: MIMAT0000663
Star sequence

Mmu-Mir-218-P4_3p*

mirBase accessionMIMAT0005444
Sequence
43- AUGGUUCUGUCAAGCACCGCG -64
Get sequence
Proposed targets microrna.org: MIMAT0005444
TargetScanVert: mmu-miR-218-2-3p
miRDB: MIMAT0005444