MirGeneDB 2.1
MirGeneDB ID

Gja-Mir-218-P4

Family name MIR-218 (all species)
Seed UGUGCUU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-218-P2 
Orthologues Aca-Mir-218-P4  Ami-Mir-218-P4  Bta-Mir-218-P4  Cfa-Mir-218-P4  Cli-Mir-218-P4  Cmi-Mir-218-P4  Cpi-Mir-218-P4  Cpo-Mir-218-P4  Dno-Mir-218-P4  Dre-Mir-218-P4-v1  Dre-Mir-218-P4-v2  Ete-Mir-218-P4  Gga-Mir-218-P4  Gmo-Mir-218-P4  Hsa-Mir-218-P4  Lch-Mir-218-P4  Loc-Mir-218-P4  Mal-Mir-218-P4  Mdo-Mir-218-P4  Mml-Mir-218-P4  Mmu-Mir-218-P4  Oan-Mir-218-P4  Ocu-Mir-218-P4  Pbv-Mir-218-P4  Rno-Mir-218-P4  Sha-Mir-218-P4  Spt-Mir-218-P4  Sto-Mir-218-P4  Tgu-Mir-218-P4  Tni-Mir-218-P4  Xla-Mir-218-P4a  Xla-Mir-218-P4b  Xtr-Mir-218-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015169213.1: 295346-295409 [+]
Precursor
(pre-Mir +30nt flank)
ACUGACUCUGGCUGUUGAUGGGAUUUUCCUUUGUGCUUGAUCUAACCAUGUGGUAGAACAAUACAAAUUGAACAUGGUUCUGUCAAGCACCAUGGAAGGCUCCAUGCUUUCCUGCAGCAUAGCA
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Structure
        10          20        30        40        50        60 
ACUGACUCUGGCUGUUG--|   GA      UUU         CU        GGUAGAACA 
                   AUGG  UUUUCC   GUGCUUGAU  AACCAUGU         A
                   UACC  GGAAGG   CACGAACUG  UUGGUACA         U
ACGAUACGACGUCCUUUCG^   UC      UAC         UC        AGUUAAACA 
  120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-218-P4_5p
mirBase accessionNone
Sequence 
0- UUGUGCUUGAUCUAACCAUGU -21
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Star sequence

Gja-Mir-218-P4_3p* (predicted)
mirBase accessionNone
Sequence 
43- AUGGUUCUGUCAAGCACCAUG -64
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