Mir-130-P2a2

MirGeneDB ID

Tni-Mir-130-P2a2

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-301

Paralogues

Tni-Mir-130-P1a2

Orthologues

Aca-Mir-130-P2a Ami-Mir-130-P2a Bta-Mir-130-P2a Cfa-Mir-130-P2a Cja-Mir-130-P2a Cli-Mir-130-P2a Cmi-Mir-130-P2a Cpi-Mir-130-P2a Cpo-Mir-130-P2a Dno-Mir-130-P2a Dre-Mir-130-P2a2 Eca-Mir-130-P2a Gga-Mir-130-P2a Gja-Mir-130-P2a Gmo-Mir-130-P2a2 Hsa-Mir-130-P2a Laf-Mir-130-P2a Lch-Mir-130-P2a Loc-Mir-130-P2a Mal-Mir-130-P2a2 Mml-Mir-130-P2a Mmr-Mir-130-P2a Mmu-Mir-130-P2a Mun-Mir-130-P2a Oan-Mir-130-P2a Ocu-Mir-130-P2a Pab-Mir-130-P2a Pbv-Mir-130-P2a Rno-Mir-130-P2a Spt-Mir-130-P2a Sto-Mir-130-P2a Tgu-Mir-130-P2a Xtr-Mir-130-P2a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

4: 1516061-1516123 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P2a2)

Mir-130-P1a2 4: 1515785-1515843 [+] UCSC Ensembl
Mir-130-P2a2 4: 1516061-1516123 [+] UCSC Ensembl
Mir-218-P3 4: 1554674-1554731 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCACGUGCUGACACAUGCUGAGGUCAGCUGCUCUGACAAUGUUGCACUACUGUACCAUCCAUUCUAGCAGUGCAAUAGUAUUGUCAUAGCAUUUGGCCUCUGCUCACGCUAACCUGGGGCCC

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Structure

        10          20        30        40           50         
UCCACGUGCUGACACAU--  U        C    C       ---|       A  GUACCA 
                   GC GAGGUCAG UGCU UGACAAU   GUUGCACU CU      U
                   CG CUCCGGUU ACGA ACUGUUA   UAACGUGA GA      C
CCCGGGGUCCAAUCGCACU  U        U    U       UGA^       C  UCUUAC 
 120       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-130-P2a2_5p*

mirBase accession

None

Sequence

0- GCUCUGACAAUGUUGCACUACU -22

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Mature sequence

Tni-Mir-130-P2a2_3p

mirBase accession

MIMAT0002988

Sequence

38- CAGUGCAAUAGUAUUGUCAUAGCAU -63

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