MirGeneDB ID | Lch-Mir-130-P2a |
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Family name | MIR-130 (all species) |
Seed | AGUGCAA |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-130-P1a Lch-Mir-130-P1b Lch-Mir-130-P1c Lch-Mir-130-P1d Lch-Mir-130-P2b Lch-Mir-130-P2d Lch-Mir-130-P3a Lch-Mir-130-P3b Lch-Mir-130-P3c Lch-Mir-130-P4a |
Orthologues | Aca-Mir-130-P2a Ami-Mir-130-P2a Bta-Mir-130-P2a Cfa-Mir-130-P2a Cja-Mir-130-P2a Cli-Mir-130-P2a Cmi-Mir-130-P2a Cpi-Mir-130-P2a Cpo-Mir-130-P2a Dno-Mir-130-P2a Dre-Mir-130-P2a1 Dre-Mir-130-P2a2 Eca-Mir-130-P2a Gga-Mir-130-P2a Gja-Mir-130-P2a Gmo-Mir-130-P2a1 Gmo-Mir-130-P2a2 Hsa-Mir-130-P2a Laf-Mir-130-P2a Loc-Mir-130-P2a Mal-Mir-130-P2a1 Mal-Mir-130-P2a2 Mml-Mir-130-P2a Mmr-Mir-130-P2a Mmu-Mir-130-P2a Mun-Mir-130-P2a Oan-Mir-130-P2a Ocu-Mir-130-P2a Pab-Mir-130-P2a Pbv-Mir-130-P2a Rno-Mir-130-P2a Spt-Mir-130-P2a Sto-Mir-130-P2a Tgu-Mir-130-P2a Tni-Mir-130-P2a2 Xla-Mir-130-P2a3 Xla-Mir-130-P2a4 Xtr-Mir-130-P2a |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH126620.1: 804317-804379 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | ACUUUGUAACAAUGCGUGCUGGUGUCAGCUGCUCUGACAGUGUUGCACUACUGUAUACACAAGUUAAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGGGCCCAGUUCAAACACCCUCCUGCUUAGet precursor sequence |
Structure | 10 20 30 40 50 ACUUUGUAACAAUGCGU-- UG C C ---| A GUAUAC GCUGG UCAG UGCU UGACAGU GUUGCACU CU A UGACC GGUC ACGA ACUGUUA UAACGUGA GA C AUUCGUCCUCCCACAAACU CG U A UGA^ C AUUGAA 120 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Star sequence | Lch-Mir-130-P2a_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GCUCUGACAGUGUUGCACUACU -22
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Mature sequence | Lch-Mir-130-P2a_3p (predicted) |
mirBase accession | None |
Sequence |
38- CAGUGCAAUAGUAUUGUCAAAGCAU -63
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|