MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-130-P2a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-130-P1a  Gja-Mir-130-P1b  Gja-Mir-130-P1c  Gja-Mir-130-P2b  Gja-Mir-130-P3a  Gja-Mir-130-P4a 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cja-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Eca-Mir-130-P2a  Gga-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Laf-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmr-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pab-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xtr-Mir-130-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015164679.1: 147797-147855 [+]
Precursor
(pre-Mir +30nt flank)
UGGCACCAGUGGGCUGCUGGGACCGCCGGCUCUGACAAUGUUGCACUACUGUCUACACAAAUUAAGCAGUGCAAUAAUAUUGUCAAAGCAUUUGGUUCCAGUUCUAAUACGUCCUGACU
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Structure
        10          20        30        40           50       
UGGCACCAGUGGGCUGC--        CCG   C         ---|     A  GUCUAC 
                   UGGGACCG   GCU UGACAAUGU   UGCACU CU      A
                   ACCUUGGU   CGA ACUGUUAUA   ACGUGA GA      C
UCAGUCCUGCAUAAUCUUG        UUA   A         AUA^     C  AUUAAA 
       110       100        90        80        70        60
Deep sequencing
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CommentThere are Drosha cuts -1 and -2 on the 5p arm.
3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Gja-Mir-130-P2a_5p*
mirBase accessionNone
Sequence 
0- UCUGACAAUGUUGCACUACU -20
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Mature sequence

Gja-Mir-130-P2a_3p
mirBase accessionNone
Sequence 
36- CAGUGCAAUAAUAUUGUCAAAGC -59
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