| MirGeneDB ID | Laf-Mir-130-P2a |
|---|---|
| Family name | MIR-130 (all species) |
| Seed | AGUGCAA |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | Laf-Mir-130-P1c Laf-Mir-130-P2b Laf-Mir-130-P3b Laf-Mir-130-P4a |
| Orthologues | Aca-Mir-130-P2a Ami-Mir-130-P2a Bta-Mir-130-P2a Cfa-Mir-130-P2a Cja-Mir-130-P2a Cli-Mir-130-P2a Cmi-Mir-130-P2a Cpi-Mir-130-P2a Cpo-Mir-130-P2a Dno-Mir-130-P2a Dre-Mir-130-P2a1 Dre-Mir-130-P2a2 Eca-Mir-130-P2a Gga-Mir-130-P2a Gja-Mir-130-P2a Gmo-Mir-130-P2a1 Gmo-Mir-130-P2a2 Hsa-Mir-130-P2a Lch-Mir-130-P2a Loc-Mir-130-P2a Mal-Mir-130-P2a1 Mal-Mir-130-P2a2 Mml-Mir-130-P2a Mmr-Mir-130-P2a Mmu-Mir-130-P2a Mun-Mir-130-P2a Oan-Mir-130-P2a Ocu-Mir-130-P2a Pab-Mir-130-P2a Pbv-Mir-130-P2a Rno-Mir-130-P2a Spt-Mir-130-P2a Sto-Mir-130-P2a Tgu-Mir-130-P2a Tni-Mir-130-P2a2 Xla-Mir-130-P2a3 Xla-Mir-130-P2a4 Xtr-Mir-130-P2a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010097.1: 764034-764093 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GAGCUGGGAUCCCACCUUCUGGCCGCAGGUGCUCUGACGAGGUUGCACUACUGUGCGCUGAGAAGCAGUGCAAUGAUAUUGUCAAAGCAUCUGGGACCAGCCUUGGGGAUCCCCCCCAGCGet precursor sequence |
| Structure | 10 20 30 40 50 GAGCUGGGAUCCCACCUU-- - G C G---| A GUGCG CUGG CC CAGGUGCU UGACGA GUUGCACU CU \ GACC GG GUCUACGA ACUGUU UAACGUGA GA C CGACCCCCCCUAGGGGUUCC A - A AUAG^ C AGAGU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Star sequence | Laf-Mir-130-P2a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCUCUGACGAGGUUGCACUACU -22
Get sequence
|
| Mature sequence | Laf-Mir-130-P2a_3p |
| mirBase accession | None |
| Sequence |
35- CAGUGCAAUGAUAUUGUCAAAGCAU -60
Get sequence
|
