MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-130-P2a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Horse (Equus caballus)
MiRBase ID eca-mir-301b
Paralogues Eca-Mir-130-P1c  Eca-Mir-130-P2b  Eca-Mir-130-P3b  Eca-Mir-130-P4a 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cja-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Laf-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmr-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pab-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xtr-Mir-130-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)
CM009155.1: 5383504-5383562 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2a)
Mir-130-P2a CM009155.1: 5383504-5383562 [+] UCSC Ensembl
Mir-130-P4a CM009155.1: 5383829-5383887 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGACGGUGGGUCCCUCCUGCUGGCCGCAGGUGCUGUGACGAUGUUGCACUACUGUGCUCUGAGAAGCAGUGCAAUGAUAUUGUCAAAGCAUCUGGGACUAGCCUUGGGGACCUCCCUUC
Get precursor sequence
Structure
        10        20         30        40           50         
GGACGGUGGGUCCCUCCUG    -  G        G         ---|     A  GUGCU 
                   CUGG CC CAGGUGCU UGACGAUGU   UGCACU CU     \
                   GAUC GG GUCUACGA ACUGUUAUA   ACGUGA GA     C
CUUCCCUCCAGGGGUUCC-    A  -        A         GUA^     C  AGAGU 
       110        100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-130-P2a_5p* (predicted)

mirBase accessionMIMAT0013000
Sequence
0- UGCUGUGACGAUGUUGCACUACU -23
Get sequence
Mature sequence

Eca-Mir-130-P2a_3p

mirBase accessionMIMAT0013001
Sequence
36- CAGUGCAAUGAUAUUGUCAAAGC -59
Get sequence