| MirGeneDB ID | Eca-Mir-130-P1c |
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| Family name |
MIR-130 (all species) |
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| Seed |
AGUGCAA |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-130a
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| Paralogues |
Eca-Mir-130-P2a
Eca-Mir-130-P2b
Eca-Mir-130-P3b
Eca-Mir-130-P4a
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| Orthologues |
Aca-Mir-130-P1c
Ami-Mir-130-P1c
Bta-Mir-130-P1c
Cfa-Mir-130-P1c
Cja-Mir-130-P1c
Cpi-Mir-130-P1c
Cpo-Mir-130-P1c
Dno-Mir-130-P1c
Ete-Mir-130-P1c
Gja-Mir-130-P1c
Hsa-Mir-130-P1c
Laf-Mir-130-P1c
Lch-Mir-130-P1c
Mdo-Mir-130-P1c
Mml-Mir-130-P1c
Mmr-Mir-130-P1c
Mmu-Mir-130-P1c
Mun-Mir-130-P1c
Neu-Mir-130-P1c
Oan-Mir-130-P1c
Ocu-Mir-130-P1c
Pab-Mir-130-P1c
Pbv-Mir-130-P1c
Rno-Mir-130-P1c
Sha-Mir-130-P1c
Spt-Mir-130-P1c
Sto-Mir-130-P1c
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009159.1: 21236001-21236062 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGGACCGGCAUGCCUCUGCUGCGGGCCGGAGCUCUUUUCACAUUGUGCUACUGUCUGCACCUACCACUAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAUGUAGUGCUCCCCAGCGCCGGCUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AGGACCGGCAUGCCUCU- -| A C UG A GUCUGCA
GCUGCG GGCCGG GCUCUUUU ACAUUG CU CU C
UGAUGU CCGGUU CGGGAAAA UGUAAC GA GA C
GUCGGCCGCGACCCCUCG A^ A U GU C UCACCAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | The post-transcriptional addition of a terminal 3' uridine is supported by the existence of multiple examples of 3' DcRNA reads that start with the U in human and several other vertebrates. All other taxa are treated accordingly. |
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| 3' NTU |
Yes
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
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| Star sequence |
Eca-Mir-130-P1c_5p* |
| mirBase accession | None |
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| Sequence |
0- GCUCUUUUCACAUUGUGCUACU -22
Get sequence
|
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| Mature sequence |
Eca-Mir-130-P1c_3p |
| mirBase accession | MIMAT0013047 |
|---|
| Sequence |
40- CAGUGCAAUGUUAAAAGGGCAU -62
Get sequence
|
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