MirGeneDB 3.0

MirGeneDB ID

Bta-Mir-130-P1c

Family name MIR-130 (all species)
Seed AGUGCAA
Species Cow (Bos taurus)
MiRBase ID bta-mir-130a
Paralogues Bta-Mir-130-P2a  Bta-Mir-130-P2b  Bta-Mir-130-P3b  Bta-Mir-130-P4a 
Orthologues Aca-Mir-130-P1c  Ami-Mir-130-P1c  Cfa-Mir-130-P1c  Cja-Mir-130-P1c  Cpi-Mir-130-P1c  Cpo-Mir-130-P1c  Dno-Mir-130-P1c  Eca-Mir-130-P1c  Ete-Mir-130-P1c  Gja-Mir-130-P1c  Hsa-Mir-130-P1c  Laf-Mir-130-P1c  Lch-Mir-130-P1c  Mdo-Mir-130-P1c  Mml-Mir-130-P1c  Mmr-Mir-130-P1c  Mmu-Mir-130-P1c  Mun-Mir-130-P1c  Neu-Mir-130-P1c  Oan-Mir-130-P1c  Ocu-Mir-130-P1c  Pab-Mir-130-P1c  Pbv-Mir-130-P1c  Rno-Mir-130-P1c  Sha-Mir-130-P1c  Spt-Mir-130-P1c  Sto-Mir-130-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037342.1: 80888267-80888328 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGGCCGGCGCCCCUCUGCUGCGGGCCGGAGCUCUUUUCACAUUGUGCUACUGUCUGCGCCUGUCACUAGCAGUGCAAUGUUAAAAGGGCAUUGGCUGUGCAGCGCUACCCAGCGCCGGCUG
Get precursor sequence
Structure
        10         20         30        40        50        60
AGGGCCGGCGCCCCUCU-      -|     A        C      UG  A  GUCUGCG 
                  GCUGCG GGCCGG GCUCUUUU ACAUUG  CU CU       C
                  CGACGU UCGGUU CGGGAAAA UGUAAC  GA GA       C
GUCGGCCGCGACCCAUCG      G^     A        U      GU  C  UCACUGU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThe post-transcriptional addition of a terminal 3' uridine is supported by the existence of multiple examples of 3' DcRNA reads that start with the U in human and several other vertebrates. All other taxa are treated accordingly.
3' NTU Yes
MotifsUG at 5p(-14)
Tissue expression
 +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-130-P1c_5p*

mirBase accessionNone
Sequence
0- GCUCUUUUCACAUUGUGCUACU -22
Get sequence
Mature sequence

Bta-Mir-130-P1c_3p

mirBase accessionMIMAT0009223
Sequence
40- CAGUGCAAUGUUAAAAGGGCAU -62
Get sequence
Proposed targets TargetScanVert: bta-miR-130a