MirGeneDB 3.0

MirGeneDB ID

Mmu-Mir-130-P1c

Family name MIR-130 (all species)
Seed AGUGCAA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-130a
Paralogues Mmu-Mir-130-P2a  Mmu-Mir-130-P2b  Mmu-Mir-130-P4a 
Orthologues Aca-Mir-130-P1c  Ami-Mir-130-P1c  Bta-Mir-130-P1c  Cfa-Mir-130-P1c  Cja-Mir-130-P1c  Cpi-Mir-130-P1c  Cpo-Mir-130-P1c  Dno-Mir-130-P1c  Eca-Mir-130-P1c  Ete-Mir-130-P1c  Gja-Mir-130-P1c  Hsa-Mir-130-P1c  Laf-Mir-130-P1c  Lch-Mir-130-P1c  Mdo-Mir-130-P1c  Mml-Mir-130-P1c  Mmr-Mir-130-P1c  Mun-Mir-130-P1c  Neu-Mir-130-P1c  Oan-Mir-130-P1c  Ocu-Mir-130-P1c  Pab-Mir-130-P1c  Pbv-Mir-130-P1c  Rno-Mir-130-P1c  Sha-Mir-130-P1c  Spt-Mir-130-P1c  Sto-Mir-130-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mm10)
chr2: 84741116-84741176 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGGCCGGCAUGCCUUUGCUGCUGGCCGGAGCUCUUUUCACAUUGUGCUACUGUCUAACGUGUACCGAGCAGUGCAAUGUUAAAAGGGCAUCGGCCUUGUAGUACUACCCAGUGCCGGCAG
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Structure
        10         20         30        40        50          
CGGGCCGGCAUGCCUUU-     U-|    GA        C      UG  A  GUCUAAC 
                  GCUGC  GGCCG  GCUCUUUU ACAUUG  CU CU       \
                  UGAUG  CCGGC  CGGGAAAA UGUAAC  GA GA       G
GACGGCCGUGACCCAUCA     UU^    UA        U      GU  C  GCCAUGU 
 .       110       100        90        80        70
Deep sequencing
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CommentThe post-transcriptional addition of a terminal 3' uridine is supported by the existence of multiple examples of 3' DcRNA reads that start with the U in human and several other vertebrates. All other taxa are treated accordingly.
3' NTU Yes
MotifsUG at 5p(-14)
Tissue expression
 +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Star sequence

Mmu-Mir-130-P1c_5p*

mirBase accessionMIMAT0016983
Sequence
0- GCUCUUUUCACAUUGUGCUACU -22
Get sequence
Proposed targets TargetScanVert: mmu-miR-130a-5p
miRDB: MIMAT0016983
Mature sequence

Mmu-Mir-130-P1c_3p

mirBase accessionMIMAT0000141
Sequence
39- CAGUGCAAUGUUAAAAGGGCAU -61
Get sequence
Proposed targets microrna.org: MIMAT0000141
TargetScanVert: mmu-miR-130a-3p
miRDB: MIMAT0000141