MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-130-P1c

Family name MIR-130 (all species)
Seed AGUGCAA
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-130a
Paralogues Ocu-Mir-130-P2a  Ocu-Mir-130-P2b  Ocu-Mir-130-P4a 
Orthologues Aca-Mir-130-P1c  Ami-Mir-130-P1c  Bta-Mir-130-P1c  Cfa-Mir-130-P1c  Cja-Mir-130-P1c  Cpi-Mir-130-P1c  Cpo-Mir-130-P1c  Dno-Mir-130-P1c  Eca-Mir-130-P1c  Ete-Mir-130-P1c  Gja-Mir-130-P1c  Hsa-Mir-130-P1c  Laf-Mir-130-P1c  Lch-Mir-130-P1c  Mdo-Mir-130-P1c  Mml-Mir-130-P1c  Mmr-Mir-130-P1c  Mmu-Mir-130-P1c  Mun-Mir-130-P1c  Neu-Mir-130-P1c  Oan-Mir-130-P1c  Pab-Mir-130-P1c  Pbv-Mir-130-P1c  Rno-Mir-130-P1c  Sha-Mir-130-P1c  Spt-Mir-130-P1c  Sto-Mir-130-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)		 chr1: 190714203-190714264 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGCUGGCAUGCCUCUGCUGCUGGCCAGAGCUCUUUUCACAUUGUGCUACUGUCUGCGCCUAUCACGAGCAGUGCAAUGUCAAAAGGGCAUUGGCCAUGUAGUGCUACCCCGCGCCGGCUG
Get precursor sequence
Structure
        10         20         30        40        50        60
GCAGCUGGCAUGCCUCU-     -|      A        C      UG  A  GUCUGCG 
                  GCUGC UGGCCAG GCUCUUUU ACAUUG  CU CU       C
                  UGAUG ACCGGUU CGGGAAAA UGUAAC  GA GA       C
GUCGGCCGCGCCCCAUCG     U^      A        C      GU  C  GCACUAU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThe post-transcriptional addition of a terminal 3' uridine is supported by the existence of multiple examples of 3' DcRNA reads that start with the U in human and several other vertebrates. All other taxa are treated accordingly.
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
He Ki Te To Wh
Star sequence

Ocu-Mir-130-P1c_5p*
mirBase accessionMIMAT0048217
Sequence 
0- GCUCUUUUCACAUUGUGCUACU -22
Get sequence
Mature sequence

Ocu-Mir-130-P1c_3p
mirBase accessionMIMAT0048218
Sequence 
40- CAGUGCAAUGUCAAAAGGGCAU -62
Get sequence