MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-130-P4a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-130b
Paralogues Ocu-Mir-130-P1c  Ocu-Mir-130-P2a  Ocu-Mir-130-P2b 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)		 chr21: 5522961-5523020 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P4a)		 Mir-130-P2a chr21: 5522622-5522681 [+] UCSC Ensembl
Mir-130-P4a chr21: 5522961-5523020 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGAGGCGCCCGCCAGCAGGCCUGCCCGAUACUCUUUCCCUGUUGCACUACUGUGGACCACUGGGAAGCAGUGCAAUGAUGAAAGGGCAUCGGUCAGGCCGGCCGCUGCUCCGCAGGGCU
Get precursor sequence
Structure
        10          20        30        40        50         
GAGAGGCGCCCGCCAGCA--|     C     A       CC         A  GUGGAC 
                    GGCCUG CCGAU CUCUUUC  UGUUGCACU CU      C
                    CCGGAC GGCUA GGGAAAG  GUAACGUGA GA      A
UCGGGACGCCUCGUCGCCGG^     U     C       UA         C  AGGGUC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
He Ki Te To Wh
Star sequence

Ocu-Mir-130-P4a_5p*
mirBase accessionMIMAT0048219
Sequence 
0- ACUCUUUCCCUGUUGCACUACU -22
Get sequence
Mature sequence

Ocu-Mir-130-P4a_3p
mirBase accessionMIMAT0048220
Sequence 
38- CAGUGCAAUGAUGAAAGGGCAU -60
Get sequence