MirGeneDB 3.0
MirGeneDB ID

Dno-Mir-130-P4a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-130b
Paralogues Dno-Mir-130-P1c  Dno-Mir-130-P2a  Dno-Mir-130-P2b  Dno-Mir-130-P3b 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(dasNov3)		 JH569570: 1030022-1030081 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P4a)		 Mir-130-P4a JH569570: 1030022-1030081 [-] UCSC Ensembl
Mir-130-P2a JH569570: 1030370-1030429 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAGGGAGGCGCUGGCAGGCCUGCCCGACACUCUUUCCCUGUUGCACUACUGUGGGCCGCUGGGAAGCAGUGCAAUGAUGAAAGGGCAUCGGUCGGGUCUGGACCCGUCACCAGCAAUG
Get precursor sequence
Structure
        10          20        30        40        50         
AGAAGGGAGGCGCUGGC--|      C    CA       CC         A  GUGGGC 
                   AGGCCUG CCGA  CUCUUUC  UGUUGCACU CU      C
                   UCUGGGC GGCU  GGGAAAG  GUAACGUGA GA      G
GUAACGACCACUGCCCAGG^      U    AC       UA         C  AGGGUC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Dno-Mir-130-P4a_5p*
mirBase accessionMIMAT0047629
Sequence 
0- ACUCUUUCCCUGUUGCACUACU -22
Get sequence
Mature sequence

Dno-Mir-130-P4a_3p
mirBase accessionMIMAT0047630
Sequence 
38- CAGUGCAAUGAUGAAAGGGCAU -60
Get sequence