Mir-130-P4a

MirGeneDB ID

Hsa-Mir-130-P4a

Family name

MIR-130 (all species)

Seed

CUCUUUC

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-130b

Paralogues

Hsa-Mir-130-P1c Hsa-Mir-130-P2a Hsa-Mir-130-P2b Hsa-Mir-130-P3b

Orthologues

Aca-Mir-130-P4a Bta-Mir-130-P4a Cfa-Mir-130-P4a Cmi-Mir-130-P4a Cpi-Mir-130-P4a Cpo-Mir-130-P4a Dno-Mir-130-P4a Dre-Mir-130-P4a1 Ete-Mir-130-P4a Gga-Mir-130-P4a Gja-Mir-130-P4a Lch-Mir-130-P4a Loc-Mir-130-P4a Mal-Mir-130-P4a1 Mdo-Mir-130-P4a Mml-Mir-130-P4a Mmu-Mir-130-P4a Mun-Mir-130-P4a Ocu-Mir-130-P4a Pbv-Mir-130-P4a Rno-Mir-130-P4a Sha-Mir-130-P4a Spt-Mir-130-P4a Sto-Mir-130-P4a Tgu-Mir-130-P4a Xla-Mir-130-P4a3 Xla-Mir-130-P4a4 Xtr-Mir-130-P4a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr22: 21653316-21653375 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P4a)

Mir-130-P2a chr22: 21652990-21653049 [+] UCSC Ensembl
Mir-130-P4a chr22: 21653316-21653375 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGGGGGAGGCACUGGCAGGCCUGCCCGACACUCUUUCCCUGUUGCACUACUAUAGGCCGCUGGGAAGCAGUGCAAUGAUGAAAGGGCAUCGGUCAGGUCCAGCCUGCUACCCUGGGAGG

Get precursor sequence

Structure

        10          20        30        40        50         
CUGGGGGAGGCACUGGCA--|     C    CA       CC         A  AUAGGC 
                    GGCCUG CCGA  CUCUUUC  UGUUGCACU CU      C
                    CUGGAC GGCU  GGGAAAG  GUAACGUGA GA      G
GGAGGGUCCCAUCGUCCGAC^     U    AC       UA         C  AGGGUC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	3-	3-	3-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	5-	5-	5-	5-	5-	5-	5-	6-	6-	6-	6-	6-

Mature sequence

Hsa-Mir-130-P4a_5p

mirBase accession

MIMAT0004680

Sequence

0- ACUCUUUCCCUGUUGCACUACU -22

Get sequence

Proposed targets

microrna.org: MIMAT0004680
TargetScanVert: hsa-miR-130b-5p
TargetMiner: hsa-miR-130b-5p
miRDB: MIMAT0004680

Co-mature sequence

Hsa-Mir-130-P4a_3p

mirBase accession

MIMAT0000691

Sequence

38- CAGUGCAAUGAUGAAAGGGCAU -60

Get sequence

Proposed targets

microrna.org: MIMAT0000691
TargetScanVert: hsa-miR-130b-3p
TargetMiner: hsa-miR-130b-3p
miRDB: MIMAT0000691