Mir-130-P4a

MirGeneDB ID

Cmi-Mir-130-P4a

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-130-P1a Cmi-Mir-130-P1b Cmi-Mir-130-P2a Cmi-Mir-130-P2b Cmi-Mir-130-P3a Cmi-Mir-130-P3b

Orthologues

Aca-Mir-130-P4a Bta-Mir-130-P4a Cfa-Mir-130-P4a Cja-Mir-130-P4a Cpi-Mir-130-P4a Cpo-Mir-130-P4a Dno-Mir-130-P4a Dre-Mir-130-P4a1 Eca-Mir-130-P4a Ete-Mir-130-P4a Gga-Mir-130-P4a Gja-Mir-130-P4a Hsa-Mir-130-P4a Laf-Mir-130-P4a Lch-Mir-130-P4a Loc-Mir-130-P4a Mal-Mir-130-P4a1 Mdo-Mir-130-P4a Mml-Mir-130-P4a Mmr-Mir-130-P4a Mmu-Mir-130-P4a Mun-Mir-130-P4a Ocu-Mir-130-P4a Pab-Mir-130-P4a Pbv-Mir-130-P4a Rno-Mir-130-P4a Sha-Mir-130-P4a Spt-Mir-130-P4a Sto-Mir-130-P4a Tgu-Mir-130-P4a Xla-Mir-130-P4a3 Xla-Mir-130-P4a4 Xtr-Mir-130-P4a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636069.1: 50385-50445 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUGGCGAUGGAGAUGCUCAGGCGCCUGCCGCUCUGUCAGUGUUGCGCUACUGUGGGACUGGUCGCUAGCAGUGCAAUAUUGAAAGAGCAUCAGUUGUCUUGAGGUGACCUCGACAACAUC

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Structure

        10          20        30        40        50          
CCUGGCGAUGGAGAUGC-  -|    C   CC     G             A  GUGGGAC 
                  UC AGGCG CUG  GCUCU UCAGUGUUGCGCU CU       \
                  AG UCUGU GAC  CGAGA AGUUAUAACGUGA GA       U
CUACAACAGCUCCAGUGG  U^    U   UA     A             C  UCGCUGG 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-130-P4a_5p*

mirBase accession

None

Sequence

0- GCUCUGUCAGUGUUGCGCUACU -22

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Mature sequence

Cmi-Mir-130-P4a_3p

mirBase accession

None

Sequence

39- CAGUGCAAUAUUGAAAGAGCAU -61

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