Mir-130-P2a

MirGeneDB ID

Cmi-Mir-130-P2a

Family name

MIR-130 (all species)

Seed

CUGACGA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-130-P1a Cmi-Mir-130-P1b Cmi-Mir-130-P2b Cmi-Mir-130-P3a Cmi-Mir-130-P3b Cmi-Mir-130-P4a

Orthologues

Aca-Mir-130-P2a Ami-Mir-130-P2a Bta-Mir-130-P2a Cfa-Mir-130-P2a Cja-Mir-130-P2a Cli-Mir-130-P2a Cpi-Mir-130-P2a Cpo-Mir-130-P2a Dno-Mir-130-P2a Dre-Mir-130-P2a1 Dre-Mir-130-P2a2 Eca-Mir-130-P2a Gga-Mir-130-P2a Gja-Mir-130-P2a Gmo-Mir-130-P2a1 Gmo-Mir-130-P2a2 Hsa-Mir-130-P2a Laf-Mir-130-P2a Lch-Mir-130-P2a Loc-Mir-130-P2a Mal-Mir-130-P2a1 Mal-Mir-130-P2a2 Mml-Mir-130-P2a Mmr-Mir-130-P2a Mmu-Mir-130-P2a Mun-Mir-130-P2a Oan-Mir-130-P2a Ocu-Mir-130-P2a Pab-Mir-130-P2a Pbv-Mir-130-P2a Rno-Mir-130-P2a Spt-Mir-130-P2a Sto-Mir-130-P2a Tgu-Mir-130-P2a Tni-Mir-130-P2a2 Xla-Mir-130-P2a3 Xla-Mir-130-P2a4 Xtr-Mir-130-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

AAVX02053842.1: 894-951 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGUCAGGGUUGGUUGGCUGUUGUCGGAGGCUCUGACGAUAUUGCACUACUGUCCUCACCGUUAAGCAGUGCAAUAGUAUUGUCAAAGCGUCAGGCAACAGAGAGCUUCGACAUACAAU

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Structure

        10          20        30        40           50       
GGUCAGGGUUGGUUGGC--       G  G   C         ---|     A  GUCCUC 
                   UGUUGUC GA GCU UGACGAUAU   UGCACU CU      \
                   ACAACGG CU CGA ACUGUUAUG   ACGUGA GA      A
UAACAUACAGCUUCGAGAG       A  G   A         AUA^     C  AUUGCC 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-130-P2a_5p

mirBase accession

None

Sequence

0- UCUGACGAUAUUGCACUACU -20

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Co-mature sequence

Cmi-Mir-130-P2a_3p

mirBase accession

None

Sequence

35- CAGUGCAAUAGUAUUGUCAAAGC -58

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