MirGeneDB ID | Gmo-Mir-130-P2a2 |
Family name |
MIR-130 (all species) |
Seed |
AGUGCAA |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-301b
|
Paralogues |
Gmo-Mir-130-P1a1
Gmo-Mir-130-P1a2
Gmo-Mir-130-P2a1
Gmo-Mir-130-P2b1
Gmo-Mir-130-P3b1
|
Orthologues |
Aca-Mir-130-P2a
Ami-Mir-130-P2a
Bta-Mir-130-P2a
Cfa-Mir-130-P2a
Cja-Mir-130-P2a
Cli-Mir-130-P2a
Cmi-Mir-130-P2a
Cpi-Mir-130-P2a
Cpo-Mir-130-P2a
Dno-Mir-130-P2a
Dre-Mir-130-P2a2
Eca-Mir-130-P2a
Gga-Mir-130-P2a
Gja-Mir-130-P2a
Hsa-Mir-130-P2a
Laf-Mir-130-P2a
Lch-Mir-130-P2a
Loc-Mir-130-P2a
Mal-Mir-130-P2a2
Mml-Mir-130-P2a
Mmr-Mir-130-P2a
Mmu-Mir-130-P2a
Mun-Mir-130-P2a
Oan-Mir-130-P2a
Ocu-Mir-130-P2a
Pab-Mir-130-P2a
Pbv-Mir-130-P2a
Rno-Mir-130-P2a
Spt-Mir-130-P2a
Sto-Mir-130-P2a
Tgu-Mir-130-P2a
Tni-Mir-130-P2a2
Xtr-Mir-130-P2a
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Vertebrata
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
contig78289: 483-545 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCCGUGUGCUGACACAUGCUGAGGUCAGGUGCUUUGACAAUGUUGCACUACUGUACCAUCUAUUCUAGCAGUGCAAUAGUAUUGUCAUAGCAUUUAGCCUCAGCACUCAAACCCACCCCCUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
GCCGUGUGCUGACACAU-- UC U ---| A GUACCA
GCUGAGG AGGUGCU UGACAAU GUUGCACU CU U
CGACUCC UUUACGA ACUGUUA UAACGUGA GA C
UGUCCCCCACCCAAACUCA GA U UGA^ C UCUUAU
120 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Gmo-Mir-130-P2a2_5p* |
mirBase accession | None |
Sequence |
0- GCUUUGACAAUGUUGCACUACU -22
Get sequence
|
Mature sequence |
Gmo-Mir-130-P2a2_3p |
mirBase accession | MIMAT0044078 |
Sequence |
38- CAGUGCAAUAGUAUUGUCAUAGCAU -63
Get sequence
|