MirGeneDB 3.0

MirGeneDB ID

Aca-Mir-130-P2a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-301b
Paralogues Aca-Mir-130-P1a  Aca-Mir-130-P1b  Aca-Mir-130-P1c  Aca-Mir-130-P2b  Aca-Mir-130-P3a  Aca-Mir-130-P4a 
Orthologues Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cja-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Eca-Mir-130-P2a  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Laf-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmr-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pab-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xtr-Mir-130-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)
GL343282.1: 1200201-1200263 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2a)
Mir-130-P4a GL343282.1: 1188362-1188424 [-] UCSC Ensembl
Mir-130-P3a GL343282.1: 1189904-1189968 [-] UCSC Ensembl
Mir-130-P2a GL343282.1: 1200201-1200263 [-] UCSC Ensembl
Mir-130-P1a GL343282.1: 1201646-1201704 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUGCUGCUGGCAGGCUGCUGGGAUUGAUGGCUCUGACAGUGUUGCACUACUGUCUACACAAAUUAAGCAGUGCAAUAAUAUUGUCAAAGCAUUUGGUUCCAGUCCUGAUACAUCCUUGUUUG
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Structure
        10          20        30        40           50         
AAUGCUGCUGGCAGGCU--        UG UG   C         ---|     A  GUCUAC 
                   GCUGGGAU  A  GCU UGACAGUGU   UGCACU CU      A
                   UGACCUUG  U  CGA ACUGUUAUA   ACGUGA GA      C
GUUUGUUCCUACAUAGUCC        GU UA   A         AUA^     C  AUUAAA 
 120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Sk Ta Ta To Wh
Star sequence

Aca-Mir-130-P2a_5p*

mirBase accessionMIMAT0021917
Sequence
0- GCUCUGACAGUGUUGCACUACU -22
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Mature sequence

Aca-Mir-130-P2a_3p

mirBase accessionMIMAT0021918
Sequence
38- CAGUGCAAUAAUAUUGUCAAAGCAU -63
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