Mir-130-P2a3

MirGeneDB ID

Xla-Mir-130-P2a3

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-130-P1a3 Xla-Mir-130-P1a4 Xla-Mir-130-P1b3 Xla-Mir-130-P1b4 Xla-Mir-130-P2a4 Xla-Mir-130-P2b3 Xla-Mir-130-P2b4 Xla-Mir-130-P3a3 Xla-Mir-130-P3a4 Xla-Mir-130-P4a3 Xla-Mir-130-P4a4

Orthologues

Aca-Mir-130-P2a Ami-Mir-130-P2a Bta-Mir-130-P2a Cfa-Mir-130-P2a Cja-Mir-130-P2a Cli-Mir-130-P2a Cmi-Mir-130-P2a Cpi-Mir-130-P2a Cpo-Mir-130-P2a Dno-Mir-130-P2a Eca-Mir-130-P2a Gga-Mir-130-P2a Gja-Mir-130-P2a Hsa-Mir-130-P2a Laf-Mir-130-P2a Lch-Mir-130-P2a Loc-Mir-130-P2a Mml-Mir-130-P2a Mmr-Mir-130-P2a Mmu-Mir-130-P2a Mun-Mir-130-P2a Oan-Mir-130-P2a Ocu-Mir-130-P2a Pab-Mir-130-P2a Pbv-Mir-130-P2a Rno-Mir-130-P2a Spt-Mir-130-P2a Sto-Mir-130-P2a Tgu-Mir-130-P2a Xtr-Mir-130-P2a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030724.1: 153960220-153960282 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUUGGGGGUGAUAGUAAGCUUGUGUGAGUUGCUCUGACAGUGUUGCACUACUGUGAUCUCAAAUGAAGCAGUGCAAUAGUAUUGUCAAAGCAUUUCAUUCCAGCACAACUCCAGCUUUGUGCA

Get precursor sequence

Structure

        10          20        30        40           50         
AUUGGGGGUGAUAGUAA--   UGU     U    C       ---|       A  GUGAUC 
                   GCU   GUGAG UGCU UGACAGU   GUUGCACU CU      U
                   CGA   UACUU ACGA ACUGUUA   UAACGUGA GA      C
ACGUGUUUCGACCUCAACA   CCU     U    A       UGA^       C  AGUAAA 
 120       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Star sequence

Xla-Mir-130-P2a3_5p*

mirBase accession

None

Sequence

0- GCUCUGACAGUGUUGCACUACU -22

Get sequence

Mature sequence

Xla-Mir-130-P2a3_3p

mirBase accession

None

Sequence

38- CAGUGCAAUAGUAUUGUCAAAGCAU -63

Get sequence